Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04853 ATGGGAGAGGATGGATCAGTGGTGCAAGGTCGCTCTGTGAGAGAGGAAAATTGGGCCCAAGGCCCAAACAAGGAAAAAAACTCGCCCATAAGCACAAAAAAAAGACGATATATTACACGTATAATCCGTTTAGGGTTTAGTTCTCGGACATTTCGTGCCTCAACCCCTCGCGTTGTGCAGAGAGACATAGCCATGGGGAGGAGACCTGCTAGGTGTTATCGGCAGATAAAAAACAAGCCATATCCCAAATCACGCTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGTATGAAGAAAAAAGGTGTTGACGAGTTTCCTTTCTGCGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAAGCATTGGAAGCTGCTAGGATTGCATGCAACAAATATATGTCTAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTACATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGGATGAGAGGTGCCTTTGGAAAGCCTCAGGGTACATGTGCTAGAGTGGCCATTGGTCAGGTCCTTCTTTCTGTCCGCTGTAAGGACAGCAACAGCCATCATGCACAGGAAGCCCTACGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATAGTTAGCAGGAAATGGGGTTTCACCAAGTTTAGCCGTACTGATTATCTTAAGTACAAGTCAGAGAACAGAATTGTCCCTGATGGTGTGAATGCAAAGGTAAATGTGAAGCTGCATCATATTTGA 813 0.449 MGEDGSVVQGRSVREENWAQGPNKEKNSPISTKKRRYITRIIRLGFSSRTFRASTPRVVQRDIAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKVNVKLHHI. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04853 270 Gene3D Ribosomal protein L10e/L16 65 269 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca10g04853 270 PANTHER 60S RIBOSOMAL PROTEIN L10 65 264 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca10g04853 270 Pfam Ribosomal protein L16p/L10e 76 230 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca10g04853 270 NCBIfam 50S ribosomal protein L16 65 238 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca10g04853 270 CDD Ribosomal_L16_L10e 105 230 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca10g04853 270 MobiDBLite consensus disorder prediction 1 32 - -
Seca10g04853 270 SUPERFAMILY Ribosomal protein L16p/L10e 68 237 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca10g04853 270 ProSitePatterns Ribosomal protein L10e signature. 172 193 IPR018255 GO:0003735|GO:0005840|GO:0006412
Seca10g04853 270 FunFam 60S ribosomal protein L10 65 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04853 Seca-Chr10 111923822 111926216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04853 65 262 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 89.394 1.33e-132 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04853 K02866 - gmx:100305619 408.297