Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04844 ATGATAATTCAAGGAAGACTAATGGGGGGACGATTTAATTCATATGATCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTGGGTGAGAGAATTGGTTATGTGAACACTGGACTTAAAGAAGATGAGATGGGACTCAACATAAGGAAAACCAAAATTCTAATTTCAAATGATGCACCAAAGCATCAAACAGACAAAAAGTGCAGCATTTGTCAGGAGGAGTATGAATCAGATGATGAGGTGGGGAGGTTAAATTGTGAACACAGCTTTCACTTTCAGTGTATAAAACAATGGCTTGTGCTTAAAAACTTCTGCCCAGTCTGTAAGCAAGAAGTTGTGGTTCGACAATCCTAA 378 0.381 MIIQGRLMGGRFNSYDQFRDWRLDVDNMSYEQLLELGERIGYVNTGLKEDEMGLNIRKTKILISNDAPKHQTDKKCSICQEEYESDDEVGRLNCEHSFHFQCIKQWLVLKNFCPVCKQEVVVRQS. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04844 125 SUPERFAMILY RING/U-box 68 122 - -
Seca10g04844 125 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 120 IPR045191 GO:0061630
Seca10g04844 125 ProSiteProfiles Zinc finger RING-type profile. 76 117 IPR001841 -
Seca10g04844 125 FunFam E3 ubiquitin-protein ligase rnf12-A 43 122 - -
Seca10g04844 125 Pfam Ring finger domain 75 117 IPR001841 -
Seca10g04844 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 124 IPR013083 -
Seca10g04844 125 SMART ring_2 76 116 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04844 Seca-Chr10 111761184 111761909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04844 1 121 C3H Transcription Factor Family AT2G15530 46.341 1.93e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04844 - - lja:Lj2g3v0694690.1 227.639