Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04823 ATGAACGAAAGCGCACAGACCCACAAGCGTGAAGCTGATTCAGAAAACAAAGAGGACATTGTTGCGTCGAAGAAGTCGAAGGTCGAATCTTCCGAAGTTGGTTTGGAAGAGAATGCTGCAAAGGAAGTATCTTTCCACATTGAAGCGGATGCCGCTGAGGATAAAGGTTCGAGGCATACCATGGAAGATGCATGGGTGGTGCTTCTCGACGCATCCCTAGATTACCCCGGAAATTTGAGATGTGCACACTTTGCAATTTATGATGGACATGGAGGCCGGTTAGCTGCAGAATATGCTCAAAAGCATTTGCATGAAAATGTTCTTTCAGCAGGATTACCACGTGAGTTGTTGGATGTGAAGACAGCTAAAAGATCTATACTTGATGGTTTTCGTAAAACTGATGAGTCCCTTCTTCAAGAAAGTGCTGAAGGGGGATGGCAGGATGGTGCTACAGCTGTATGTGTTTGGGTATTGGGACAAAAAGTTTTTGTTGCAAATGTAGGAGATGCCAAAGCAGTTTTAGCTCGGTCAACAATAACTGATGGATCCCAAGATAACTCAAATGGAGTCCATGCGCTGAAGGCCATTGTTTTGACGAGAGAACACAAACCTATCTTCCCACAGGAGCGTGCACGCATTCAGAAGGTCGGTGGTGTTGTGAGCTCAAATGGACGATTACAAGGGCGTCTAGAAATTTCTAGGGCCTTTGGAGATCGCCAGTTCAAAAAGGTGGGTGTTACTGCAACCCCAGATATCCATTCTTTTGACCTTACTGATAGAGATCATTTCATCATTCTTGGCTGTGATGGCTTGTGGGGGGTATTCGGTCCCAGTGATGCTGTTGATTTTGTTCAGAAGTTATTGAATGAGGGGCTACCTGTTACAGCTGTGAGCCGTCGTCTTGTAAAGGAAGCTGTTCGTGAGCGTCGCTGCAAAGATAACTGCACTGCAATTGTCATTGTATTCAAGAGCATTGTCACTATCTTTGTAATCAGGAATCAAAGACCACCCCTTACTGTATCTTTACTGGTTCAGTTCTTCCTATTAGCATTACTGGGGATCACTGCAAACCAAGGCTTTTACTTGTTGGGATTGTATTATGCTTCTCCAACTTTTGCTTCTGCAATGCAAAACTCAGTTCCTGCTATCACTTTTGTCTTGGCCTCAGCTCTAAGACTTGAGGAAGCCAACCTTGCAAGGAGAGATGGATTGGCAAAAGTACTAGGAACCATTGCAAGTGTAGGGGGTGCCACTATAATTACTCTTTACAAAGGTCCTCCTCTTCTTCACTTGCAGACAGACCAAACACATGGAGACACCTTAAAAGTAGATCAATCTTCAACAAAAGTGCAAAATTGGACATGGGGTTGCATATACTTGCTTGGACATTGTTTATCTTGGGCTGGATGGATGGTTTTTCAGGCTCCTGTGGTGAAGAAGTATCCAGCAAAACTAACACTCACTTCATTTACATGCTTTTTTGGATTGATCCAATTCTTGATCATAGCTGCCTTCACAGAAAATGATATTGAGAAGTGGAAGATAATATCAGCAGAAGAGCTTTTCACCATCCTATATGCTGGAATTGTATCATCTGGAATTGTCATATCTCTTCAAACATGGTGTATTCAAAAGGGTGGTCCTGTGTTTGTTGCTGTCTTTCAGCCCATACAAACTTTTCTAGTTGCTGTCATGGCAGCCTTAATTCTTGGAGATCAGTTATACTCTGGAGGGGTTATTGGTGCAATTCTCATCGTGATAGGTCTATACTTAGTCCTATGGGGGAAAACCAACGAAAAGAAAGTGGCTGAAGCATCATTAACAGAGGCCTTGCTTAATGAAAAGGAAGAGAATAAAGTTGCTGATGCAATTCCCAAAGATATACCTTGA 1890 0.4302 MNESAQTHKREADSENKEDIVASKKSKVESSEVGLEENAAKEVSFHIEADAAEDKGSRHTMEDAWVVLLDASLDYPGNLRCAHFAIYDGHGGRLAAEYAQKHLHENVLSAGLPRELLDVKTAKRSILDGFRKTDESLLQESAEGGWQDGATAVCVWVLGQKVFVANVGDAKAVLARSTITDGSQDNSNGVHALKAIVLTREHKPIFPQERARIQKVGGVVSSNGRLQGRLEISRAFGDRQFKKVGVTATPDIHSFDLTDRDHFIILGCDGLWGVFGPSDAVDFVQKLLNEGLPVTAVSRRLVKEAVRERRCKDNCTAIVIVFKSIVTIFVIRNQRPPLTVSLLVQFFLLALLGITANQGFYLLGLYYASPTFASAMQNSVPAITFVLASALRLEEANLARRDGLAKVLGTIASVGGATIITLYKGPPLLHLQTDQTHGDTLKVDQSSTKVQNWTWGCIYLLGHCLSWAGWMVFQAPVVKKYPAKLTLTSFTCFFGLIQFLIIAAFTENDIEKWKIISAEELFTILYAGIVSSGIVISLQTWCIQKGGPVFVAVFQPIQTFLVAVMAALILGDQLYSGGVIGAILIVIGLYLVLWGKTNEKKVAEASLTEALLNEKEENKVADAIPKDIP. 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04823 629 ProSiteProfiles PPM-type phosphatase domain profile. 48 322 IPR001932 -
Seca10g04823 629 Pfam EamA-like transporter family 324 421 IPR000620 GO:0016020
Seca10g04823 629 Pfam EamA-like transporter family 455 593 IPR000620 GO:0016020
Seca10g04823 629 SUPERFAMILY Multidrug resistance efflux transporter EmrE 329 423 - -
Seca10g04823 629 CDD PP2Cc 52 322 IPR001932 -
Seca10g04823 629 Gene3D - 30 325 IPR036457 -
Seca10g04823 629 SUPERFAMILY PP2C-like 45 323 IPR036457 -
Seca10g04823 629 SMART PP2C_4 44 320 IPR001932 -
Seca10g04823 629 FunFam Probable protein phosphatase 2C 67 36 324 - -
Seca10g04823 629 Pfam Protein phosphatase 2C 52 310 IPR001932 -
Seca10g04823 629 SUPERFAMILY Multidrug resistance efflux transporter EmrE 513 597 - -
Seca10g04823 629 PANTHER WAT1-RELATED PROTEIN 323 606 IPR030184 GO:0016020|GO:0022857
Seca10g04823 629 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04823 Seca-Chr10 111045112 111056057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04823 329 623 Nodulin-like Gene Family AT3G18200 63.245 1.26e-134 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04823 K17500 - vum:124833018 506.138