Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04806 ATGCTTCTGCAGGGTCACAAGAGTTATGTTCCTAACATGATCAGTGGTGCATCTCAAGCTGATATTGGGGTGTTGGTCATTTCTGCTCGAAAGGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAAACCCGTGAACATGTTCAGCTTGCAAAAACACTGGGTGTGTCTAAGCTGCTTGTTGTTGTCAATAAAATGGACGATTCTACAGTGAAGTGGTCAAAAGAAAGATATGATGAAATTGAGTCAAAGATGATACCATTTTTGAAGCAATCAGGTTATAATGTGAAGAAAGATGTTCTGTTTTTACCAATATCTGGGCTGATTGGTTCAAACCTAAAAACAAGATTGGAAAAAAGCATATGTCCATGGTGGGATGGTCCTTGCCTATTTGAAGCTCTTGACGCTATTGAAGTTCCTCAACGAGATCCCAAAGGTCCTTTCAGGATGCCTATACTTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTGGAATCTGGTACTGTTCGTGAGGGAGATTCCTTGTTGGTTATGCCAAATAAGGATCAAGTGAAAGTTGTTGCTATATTTATTGATGAGAATCGGGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATCAGATTATCTGGTGTTGAAGAAGAAGACATACTAACTGGGTTTGTCCTGTCTAGTATTGCAAATCCAATACCAGCTGTTACTGAGTTTGTTGCTCAGCTGGCAATCCTTGAATTGTTGGACAATGCTATTTTTACTGCTGGATACAAGGCTGTTCTGCACATCCACTCTGTAGTTGAAGAATGTGAGGTTATTGAGCTCATGCATCAAATTGATCCAAAGACAAAGAAGCCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCAGGTGTTGTGTGCCGAATTCAGGTTAGTAACTCGGTATGCATTGAGAAATTCTCTGATTTTCCACAACTTGGGAGATTCACTCTTCGCACTGAAGGAAAAACTGTTGCAGTGGGAAAAGTCACTGGTCTTTAA 1029 0.4033 MLLQGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDDSTVKWSKERYDEIESKMIPFLKQSGYNVKKDVLFLPISGLIGSNLKTRLEKSICPWWDGPCLFEALDAIEVPQRDPKGPFRMPILDKFKDMGTVVMGKVESGTVREGDSLLVMPNKDQVKVVAIFIDENRVKRAGPGENLRIRLSGVEEEDILTGFVLSSIANPIPAVTEFVAQLAILELLDNAIFTAGYKAVLHIHSVVEECEVIELMHQIDPKTKKPMKKKVLFVKNGAGVVCRIQVSNSVCIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04806 342 CDD eRF3_C_III 234 342 - -
Seca10g04806 342 Gene3D - 3 138 IPR027417 -
Seca10g04806 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 160 IPR027417 -
Seca10g04806 342 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 237 341 IPR009001 -
Seca10g04806 342 PANTHER TRANSLATION FACTOR 4 340 - -
Seca10g04806 342 CDD eRF3_II 147 228 - -
Seca10g04806 342 Gene3D Translation factors 235 342 - -
Seca10g04806 342 Gene3D Translation factors 145 230 - -
Seca10g04806 342 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 145 IPR000795 GO:0003924|GO:0005525
Seca10g04806 342 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 144 230 - -
Seca10g04806 342 SUPERFAMILY Translation proteins 139 232 IPR009000 -
Seca10g04806 342 Pfam Elongation factor Tu GTP binding domain 5 118 IPR000795 GO:0003924|GO:0005525
Seca10g04806 342 Pfam Elongation factor Tu C-terminal domain 233 341 IPR004160 -
Seca10g04806 342 Pfam Elongation factor Tu domain 2 160 226 IPR004161 GO:0005525
Seca10g04806 342 FunFam Putative translation elongation/initiation factor family protein 234 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04806 Seca-Chr10 110750993 110765227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04806 5 337 Eukaryotic Initiation Factors Gene Family AT5G60390 37.092 8.83e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04806 K03267 - gmx:100793653 621.313