Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04802 ATGACTCCTCACACCGTTGATGATGATGACCACGACGAAGATAACCTCTCTACCAGTGACGACGACGATGAAGGCCTCAAGGAAGACATGGCCGCGCTTGCACGAGCCTGCATGATCGCGGCACCTGCTGAACCTCACCAAATTCACACCGAGGACCCGCTCTTGCGCTCCGGCGACGCCCTCGTCCCTGTCACTAACTCCGAAGATTCCGTCGTCCCTGGTTCCAGCTCTGATAATGCCATCGTCCCCGTCACTACTGATTCTGATGATGATGACCTTGACACTCTCAAGAGAGTGCAGAGTCTCTATAAGCCTTTGGTTTCCTCTCAACCGATGATGACAATGCCAACAGTTTCTGATGGGGACGATGATGAGGATGACTTCGAGACAGTTCGCTCCATTTTCAAACGGTTTTCCACCTACGACAGAGGTTTCTCTGAAGGCAGGATGGAAAAATTGGCTGAGGGAGATCAGGGCTTGAGCCGTGAGGACAACATTGCTGACAGCTCCATCTCACCCAAATCTGATGCTGGTAAATTAAGTCCTGTTTCTCAGTCTCCTAATAATGACGTCAATTTTATGAATGGGGACATCGAAATGCCTGATGAGACTTATGAGTCTGATGCCGGCGAGGCATCCAAATTACCACACAGAAAATCAAGCCTTCCTCCGGAAGCTCTGGCTATATTTGATGCCATCAAGAAGAATAGGGATCTCCAGAAATTTCTTAGAAATAAGATGATTGTGATGGAAGCGAAAATCGAGGAAAACAAACAGCTGATGGACAAACTTAAAATCCTTAGGGACTTTGAGATTTCTTGCAGTAGAAAAACAGGGAATGCTTTATCACTCAAAAAGGATCCTCGTGTTCAGTTAATATCAGCAAGAAAGAGTTTTGATCCAAATAACTCAAAGAGAGTATCTCCAATGTGGTATGGCCCAGCTGAGAATTCACGTGTCGCTAATTATAAGATGGTATTGGAAAGATTTCCACTTTCATTGGATCGGAAAAAATGGTCTAATGTGGAAAGGGAAAATCTTTCAAAGGGAATTAAACAACAATTCCAAGAAATGGTGCTTCAAACTTCACTAGATAGAATGAGTTTGGAGGGCTCATCTGGAGGTGCAAATGACATGGATAGTATATGTGCATCAGTTAAAGATCTTGAAATTACACCAGAGAGTATTAGAGAATTTTTACCTAAAGTTAACTGGGATCGGTTGGCTTCCATGTACGTTGTTGGCCATACTGGTGCTGAATGTGAATCTAGGTGGTTGAATTGTGAAGATCCTTTGATCAACCATGGCCCATGGGCTCGTGAAGAGGATAGGTCTCTTTTGATTATTGTCCAAGATATGGGCATTAGGAACTGGTTTGATATTGCTGCGAAATTGGGCACAAACAGGACTCCATTTCAATGCTTGGCACGATACCAAAGGAGCTTAAATCCTTCAATGTTAAATAGTGAATGGACTGCGGAAGAAGATGCTCAACTTTGTTCTGCTGTTGAATTTTTTGGTGAAAGCAATTGGCAGTCTGTGGCTTCTGTTTTAGAACGTCGGACTGGAACCCAGTGCTCAAATAGATGGAAAAAGTCGCTTCGTCCTGTGAGGAAAGGGAGCTTTTCTCAAGAGGAAGATATGCGCTTAACAGTAGCAGTCATGCTTTTTGGACGGAAATGGAGTCTAATAGCTAAATTCGTTCCTGGACGAATCCAATCTCAGTGTAGGGACAGATACCTTAATAGTTTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTCAAAATTAGAAGCTGCAATTGTCAAGCATGGATTTTGCTGGTCTAAGGTTGCTGCTGATGTGCCTCCCCGCACTGATTCTCAATGCCGGAAGAGATGGAAGGTGTTATTTCCTGAACAAGTTCCTTTGCTTCAAGAAGCTAGGAGGAGGCAAAAGTCTCTTGTTCCTACGAACTTCGTTGATAGAGAATCTGAACGCCCAGCCCTTACACTGAATGACTTCCTTCCTATACAAACATTAGCTCCACCATCTGATGCTGATGCTTTGGATCTCCCTAGGAATCGTAAGAGGAAATCAAGTAATGTTCCCAAGAAAACGAGGGCTAGAAAACGTGCGAAAAAGGTTCCAGATTGTCCCGAGGAAGTACAAGATATAGTAGTATACAGTGATGAGGTCAGAACTGGTTGTGAAGGTGTTCTGTCCGGCGATGTTCCCAAGAAAAGGAGATCCAAAAGACTTGCCAGAAGGGCTAGAGTTTGTTTCAATGACGCAGAGGAGATATCAGGTAGTGATGAGGTCAAGATTGGTAATGAGAGTTCGGAAAGACAAGATACAGACAACATAACTCTTGCATGCTTTTTAAAGATCAAACCAAAGAAGAAAGGATTTAAATGTGCCAAAAATGTGAGCCTGGCTTCCTTTTCTTCTAGGACAACAATTGTATCTAAGCTGGTTGAAAATCAAACCCCATCTGTTGAGCAGGGCGAGTTGTCTCTGCCATGTGGCACTGATGATGAAACTAAAAATTTGTTCATACAGCAGAATGGTGCTTCTCAGGGACAAGTGAGAAAGCCAGGAGATTCTACTACTAATTTGACCGGTGATGACGATGATATGACTCTTGCGTGCCTTATGGGAAACAAGGCAAAGAAATTGAGTAAAACTACTAAAGGACGTAATGCACCCTCTTCTTCCAAACTGAAAAAAGGATCTGCGTTACGTCGTGAAGTGCATGGTGGAAACAAGCCAACCATCATAGCTGATGGCAGTGGACCATCAATGTCAAAGCTTGCTGAAGAGGATACCGTTTTGCATGGTGATGTGACTGAACCCACAAACATGAATGTGGAAGAAGAAGATGACCTGCTTGCTTCCTTCCTGCAAAACAAGGCAAAGAAAAAGGGAGGACGACGGGATATTCATAAAGGCAAATGTTAG 2952 0.4377 MTPHTVDDDDHDEDNLSTSDDDDEGLKEDMAALARACMIAAPAEPHQIHTEDPLLRSGDALVPVTNSEDSVVPGSSSDNAIVPVTTDSDDDDLDTLKRVQSLYKPLVSSQPMMTMPTVSDGDDDEDDFETVRSIFKRFSTYDRGFSEGRMEKLAEGDQGLSREDNIADSSISPKSDAGKLSPVSQSPNNDVNFMNGDIEMPDETYESDAGEASKLPHRKSSLPPEALAIFDAIKKNRDLQKFLRNKMIVMEAKIEENKQLMDKLKILRDFEISCSRKTGNALSLKKDPRVQLISARKSFDPNNSKRVSPMWYGPAENSRVANYKMVLERFPLSLDRKKWSNVERENLSKGIKQQFQEMVLQTSLDRMSLEGSSGGANDMDSICASVKDLEITPESIREFLPKVNWDRLASMYVVGHTGAECESRWLNCEDPLINHGPWAREEDRSLLIIVQDMGIRNWFDIAAKLGTNRTPFQCLARYQRSLNPSMLNSEWTAEEDAQLCSAVEFFGESNWQSVASVLERRTGTQCSNRWKKSLRPVRKGSFSQEEDMRLTVAVMLFGRKWSLIAKFVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDSKLEAAIVKHGFCWSKVAADVPPRTDSQCRKRWKVLFPEQVPLLQEARRRQKSLVPTNFVDRESERPALTLNDFLPIQTLAPPSDADALDLPRNRKRKSSNVPKKTRARKRAKKVPDCPEEVQDIVVYSDEVRTGCEGVLSGDVPKKRRSKRLARRARVCFNDAEEISGSDEVKIGNESSERQDTDNITLACFLKIKPKKKGFKCAKNVSLASFSSRTTIVSKLVENQTPSVEQGELSLPCGTDDETKNLFIQQNGASQGQVRKPGDSTTNLTGDDDDMTLACLMGNKAKKLSKTTKGRNAPSSSKLKKGSALRREVHGGNKPTIIADGSGPSMSKLAEEDTVLHGDVTEPTNMNVEEEDDLLASFLQNKAKKKGGRRDIHKGKC. 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04802 983 MobiDBLite consensus disorder prediction 680 713 - -
Seca10g04802 983 SUPERFAMILY Homeodomain-like 564 636 IPR009057 -
Seca10g04802 983 ProSiteProfiles Myb-like domain profile. 538 584 IPR001005 -
Seca10g04802 983 CDD SANT 541 584 IPR001005 -
Seca10g04802 983 CDD SANT 490 534 IPR001005 -
Seca10g04802 983 MobiDBLite consensus disorder prediction 163 193 - -
Seca10g04802 983 SUPERFAMILY Homeodomain-like 412 479 IPR009057 -
Seca10g04802 983 Pfam Myb-like DNA-binding domain 592 634 IPR001005 -
Seca10g04802 983 Pfam Myb-like DNA-binding domain 539 582 IPR001005 -
Seca10g04802 983 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 585 639 IPR017930 -
Seca10g04802 983 SUPERFAMILY Homeodomain-like 486 580 IPR009057 -
Seca10g04802 983 Gene3D - 432 482 - -
Seca10g04802 983 MobiDBLite consensus disorder prediction 68 84 - -
Seca10g04802 983 ProSiteProfiles Myb-like domain profile. 483 534 IPR001005 -
Seca10g04802 983 MobiDBLite consensus disorder prediction 1 28 - -
Seca10g04802 983 SMART sant 434 484 IPR001005 -
Seca10g04802 983 SMART sant 335 431 IPR001005 -
Seca10g04802 983 SMART sant 487 536 IPR001005 -
Seca10g04802 983 SMART sant 538 586 IPR001005 -
Seca10g04802 983 SMART sant 589 637 IPR001005 -
Seca10g04802 983 MobiDBLite consensus disorder prediction 65 92 - -
Seca10g04802 983 Gene3D - 489 537 - -
Seca10g04802 983 ProSiteProfiles Myb-like domain profile. 585 635 IPR001005 -
Seca10g04802 983 MobiDBLite consensus disorder prediction 149 218 - -
Seca10g04802 983 MobiDBLite consensus disorder prediction 889 932 - -
Seca10g04802 983 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 18 888 - -
Seca10g04802 983 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 539 584 IPR017930 -
Seca10g04802 983 ProSiteProfiles Myb-like domain profile. 430 482 IPR001005 -
Seca10g04802 983 MobiDBLite consensus disorder prediction 12 27 - -
Seca10g04802 983 Gene3D - 538 588 - -
Seca10g04802 983 Gene3D - 589 637 - -
Seca10g04802 983 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 430 482 IPR017930 -
Seca10g04802 983 MobiDBLite consensus disorder prediction 696 710 - -
Seca10g04802 983 Pfam Myb-like DNA-binding domain 438 499 - -
Seca10g04802 983 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 483 538 IPR017930 -
Seca10g04802 983 MobiDBLite consensus disorder prediction 853 873 - -
Seca10g04802 983 CDD SANT 593 635 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04802 Seca-Chr10 110586934 110593880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04802 215 712 MYB-Related Transcription Factor Family AT3G18100 53.682 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g04802 Myb_DNA-bind_6 6.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04802 K09422 - gmx:778073 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04802 10 110586934 110593880 Seca10g04802 10 110586934 110593880 ECH