Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04798 ATGAGAAAACCTCGCCTTGAGAAGGAAGCAACTACTAGAGGATCTTGGTCGAAGCAAGAGGACCAGAAACTCATTGACTACATACAAAAACATGGTGAAGGCTGCTGGCGTTCAATTTCTCAGGGTGCAGGGTTGCAACGCTGTGCCAAAAGCTGCCGGTTGAGATGGCTAAATTATCTAAGGCCTGACCTTAAACGTGGAGAGTTTGGAGAAGATGAAGAAGACTTAATCATCAGGCTTCATGCTCTTCTTGGCAACCGGTGGTCCTTGATAGCTGGAAGATTGCCGGGAAGGACAGATAATGAGGTGAAGAATTACTGGAATTCCCATATAAAAAAGAAGTTAGTAGAGATTGTTGGAACTGGAAAGTCATTTGGGAATAAGGAGGAAGATGGGACTAGTAGCAATAGCAATAGCAAGCATGTAAACTTGCATCTTGGGGTTGAAAGTCAGATCTCTCATTCCACACGCGGAAATCAATGCAAACTTAACTTGAACCTCGACCTTACACTCTCCATACCTTCCCTAGCCAAAGATAATTAA 543 0.4365 MRKPRLEKEATTRGSWSKQEDQKLIDYIQKHGEGCWRSISQGAGLQRCAKSCRLRWLNYLRPDLKRGEFGEDEEDLIIRLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIKKKLVEIVGTGKSFGNKEEDGTSSNSNSKHVNLHLGVESQISHSTRGNQCKLNLNLDLTLSIPSLAKDN. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04798 180 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Seca10g04798 180 SUPERFAMILY Homeodomain-like 12 107 IPR009057 -
Seca10g04798 180 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Seca10g04798 180 CDD SANT 68 111 IPR001005 -
Seca10g04798 180 CDD SANT 15 60 IPR001005 -
Seca10g04798 180 Gene3D - 68 145 - -
Seca10g04798 180 Gene3D - 13 65 - -
Seca10g04798 180 FunFam MYB transcription factor 67 120 - -
Seca10g04798 180 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Seca10g04798 180 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Seca10g04798 180 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Seca10g04798 180 SMART sant 12 62 IPR001005 -
Seca10g04798 180 SMART sant 65 113 IPR001005 -
Seca10g04798 180 FunFam MYB-related transcription factor 12 65 - -
Seca10g04798 180 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Seca10g04798 180 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04798 Seca-Chr10 110353691 110355871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04798 2 116 MYB Transcription Factor Family AT4G09460 70.435 1.05e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g04798 Myb_DNA-binding 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04798 K09422 - cave:132184217 230.335