Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04791 ATGGACCCATCCTCGATCTCTCCACCTCCAGCTTCAGCTCCGGCTCCGCTTCAGGCTCCGGCCCTCAACACCGTCCCCTTCGCCGCCGAACCGAACAACCACCCTCCAGCCGCCGCTTCAGCACCACCTGCAGCCCACCCACCCTATGCTGAGATGATATACACAGCAATCGAGGCACTGAAGGAGAAAAACGGTTCAAGCAAGAGGGCTATAGGGAAGTACATAGAACAAGTGTACAAGGAACAGCTTCCACCCACTCATGAAACTTTGCTGAGTCACCACTTGAAGCGCTTGAAGAACAATGGAATGCTTGTTATGTTCAAGAAATCTTACAAGCTTCCTAGATCTGCTCCGGGTGATGCCGATGCTTCAGCTTCGGCCCCGGCTCCGGCTCCGGCTCCAGCTCCTGCTGCCTCCACTACCCCGGGCTCAAGGCCCAGGGGCCGTCCTAGGAAGACCCAGCCCCAGCCCAACGTCCAAGCCCAGAACGTTCCCCTTCAGCCTCTTCCAGCTGGGGATGTGAACAACGCGCAGCAGCAGAATGCCGAGCCTGTATGGGCCGCGCTTGGGCTTGCTGATGAGCCTATGCCTGCTCAACCAGCCGCAACTGAGTCCAACAAGAGGCGCCCGGGCCGTCCGCGGAAGAGTGTGGCTCCGGGACTGGGCCAGCCCGGCCCGTTTGTCGCGTCGCCGGCGCGCAGGGGCCGTCCTCCTGGGTCTAGGTCTCAGAAGAGGCCCGGCCGTCCTAAGGCCAACCCTGCTGCAGCTGTGGCCGTTTCTGGTGGGCCCAAGAGACGCCCGGGCCGCCCGCCCAAAAACCACCAGCAGCAAGCCACTCCTATACCCTTTGCTGTCATCCCTGCTACTGCTGCCGCTGCACCTGAAGCGCCGGCAGAGCAACCCGGTGGTGGTGCTGTAGCTGCTGTTGGGACTCCAGGGCGCAGAGGACGCCCAAGGAAGAATGCTGCTGTTGCTGCTGCTGTGGCAGCTGCTAATGTTGCTGTCGGCGGTGGTCGTGGTGGAGGACGTGGCCGTGGTCGCGGTGGTGGAGGCCGTGGCCGTGGACGAGGAAGAGGTCGTGGGGGATTGGCTGTTCAGCCCAAAAATCCCACTGGAAGAAGGCCCGGACGCCCAAAGAAGGGAACAACTTCTGCTGCTGTTTCACAAAATGCTGCTGCTAATGAAGATCTCAAGAGGAAACTTGAACACTTTCAATCCAAAGTGAAGGAATCTCTGGCAGTTCTTAAGCCTCACTTCAACCATGAAAGTCCAGTCACTGCAATTGCAGCAATTCAAGAATTGGAAGTACTAGGAACCATGGACCTTAATGCTCCATTTAGGGATGAAACACTTCCACAGCAACAGCAGCTGCCACCACAAGAGCCACCACCGCAGCAGCAGCAGCTGCCACCACAGCAACAGTTACTACCGCAGCAGCAGCAGCCACTGCAGCAACATCTACCACCACAGCAACTGCCGCAACCACAGGTATATCAACAGCAATTTCCGCAGTTTCATCTGCAGCAGTATCACCACCAGCAGCAACTGCAGTTCCAGCAGCAGCAGCAGCCACAGCTATACCAGCACCAGGCATCACCACCACACCACCAGCAACAGTTTCATCCTTAG 1629 0.5832 MDPSSISPPPASAPAPLQAPALNTVPFAAEPNNHPPAAASAPPAAHPPYAEMIYTAIEALKEKNGSSKRAIGKYIEQVYKEQLPPTHETLLSHHLKRLKNNGMLVMFKKSYKLPRSAPGDADASASAPAPAPAPAPAASTTPGSRPRGRPRKTQPQPNVQAQNVPLQPLPAGDVNNAQQQNAEPVWAALGLADEPMPAQPAATESNKRRPGRPRKSVAPGLGQPGPFVASPARRGRPPGSRSQKRPGRPKANPAAAVAVSGGPKRRPGRPPKNHQQQATPIPFAVIPATAAAAPEAPAEQPGGGAVAAVGTPGRRGRPRKNAAVAAAVAAANVAVGGGRGGGRGRGRGGGGRGRGRGRGRGGLAVQPKNPTGRRPGRPKKGTTSAAVSQNAAANEDLKRKLEHFQSKVKESLAVLKPHFNHESPVTAIAAIQELEVLGTMDLNAPFRDETLPQQQQLPPQEPPPQQQQLPPQQQLLPQQQQPLQQHLPPQQLPQPQVYQQQFPQFHLQQYHHQQQLQFQQQQQPQLYQHQASPPHHQQQFHP. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04791 542 CDD H15 49 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca10g04791 542 SUPERFAMILY "Winged helix" DNA-binding domain 42 119 IPR036390 -
Seca10g04791 542 PRINTS AT-hook-like domain signature 370 380 IPR017956 GO:0003677
Seca10g04791 542 PRINTS AT-hook-like domain signature 144 154 IPR017956 GO:0003677
Seca10g04791 542 PRINTS AT-hook-like domain signature 262 273 IPR017956 GO:0003677
Seca10g04791 542 PANTHER HISTONE H1 30 274 - -
Seca10g04791 542 Pfam linker histone H1 and H5 family 46 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca10g04791 542 Coils Coil 394 414 - -
Seca10g04791 542 SMART AT_hook_2 372 384 IPR017956 GO:0003677
Seca10g04791 542 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Seca10g04791 542 SMART AT_hook_2 312 324 IPR017956 GO:0003677
Seca10g04791 542 SMART AT_hook_2 264 276 IPR017956 GO:0003677
Seca10g04791 542 SMART AT_hook_2 207 219 IPR017956 GO:0003677
Seca10g04791 542 SMART AT_hook_2 231 243 IPR017956 GO:0003677
Seca10g04791 542 MobiDBLite consensus disorder prediction 334 398 - -
Seca10g04791 542 MobiDBLite consensus disorder prediction 456 470 - -
Seca10g04791 542 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 45 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca10g04791 542 SMART h15plus2 43 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca10g04791 542 FunFam Histone H1.2 42 123 - -
Seca10g04791 542 MobiDBLite consensus disorder prediction 114 321 - -
Seca10g04791 542 Gene3D - 42 123 IPR036388 -
Seca10g04791 542 MobiDBLite consensus disorder prediction 1 16 - -
Seca10g04791 542 MobiDBLite consensus disorder prediction 1 45 - -
Seca10g04791 542 MobiDBLite consensus disorder prediction 151 165 - -
Seca10g04791 542 MobiDBLite consensus disorder prediction 471 542 - -
Seca10g04791 542 MobiDBLite consensus disorder prediction 445 542 - -
Seca10g04791 542 PRINTS Histone H5 signature 203 222 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca10g04791 542 PRINTS Histone H5 signature 32 53 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca10g04791 542 PRINTS Histone H5 signature 59 76 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04791 Seca-Chr10 110243111 110248144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04791 52 118 Single Myb Histone (SMH) Gene Family AT1G49950 44.776 8.18e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04791 - - gmx:100788215 327.791