Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04782 ATGGGAAGAAGAAACGGTAGAAGGCCACTGCGAGAAACCCTTTTCCATAGAGTGGAGGCATTGTTCCCTACCGTCGATAAAATCGTGAATTATCTTCGTTCAACCTACCCTGATTACCAGCGAATCAAGCATCAAACTCTAACGCGGCTTGTTCAGGAAGCTCTTCACGCCCGACAGCAGAAACATCACCATGATGAGGATGAAGAGATTTTGCGAAAGAGGATGCAGACCGCATTGACCTCATCTTCGGAGAGTGACGAACATGACGGGACTCCATCGACGTCAACGGTGGAACCTTCTTTCGACTTGACGAAGACGATGCTTCGGAATGCGTATATGGGAACGGAGGAAAAGAACGTTGAATTGGAGACAGGAAAGGCCACTAGTATTGTCAATGAAGATGAAGCCAAACAATCGAAGGGTTCATTCTCAAACGGTGGTGATGTTGAGGTGAAGGGGAAGGATGTAACAAGGTTTAGGGATTTGGGTGGGATAAAGAAGGTTTTGGAGGAATTGAACAGGACGCTGATGCCGTTCTACCATCCCCACGTGACTAGAGAGCTGGGAATTAAGCCAACTTCTGGCATTCTGTTGCATGGACCTCCTGGCTGTGGGAAGACTATATTGGCTCATGCTATAGCTAATGAGACCGGTCTTCCTTTCTATCACATTTCAGCTACTGATGTGGTGTCTGGAGTCTCAGGTGCATCCGAAGAAAATATTAGAGAGCTTTTCACTAAAGCACACAGGACTGCCCCATCAATTGTCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAGAATTTATCGCGGGAGATGGAGAAACGAATTGTGACACAGTTACTTACTTGCATGCATCAACCAGCTAATAACAACTATGTTCTTGTAATTGGAGCTACAAATAGGCCAGATGCCATTGACCCTGCCCTTAGAAGGCCTGGTAGATTTGATCATGAGATTTTTATTGGCATTCCTGATGAATCTTCTAGGGAGGAGATCCTTTTGGTGCTTACTCGTAATGTTAAACTCGAGCGTCCAATTGATCTACGAAAGATAGCTAGATGTACGCCAGGATTTGTTGGCGCTGATTTGGAAAGTGTGGTTAATGAGGCTGGTAAGCTGGCAATGATGAGAACAGTCGATGAAAGGTATATCATGGGAGAGCCTCCAGAAGGTTATTTGAGGGAACCTTGGTTGCCAGAAGAAGTGGATAAGGCTGCCATCAAAATGTCTGATTTTGAGAAAGCAATAAAAAAGGTGCAACCTTCAACAAGAAGAAAAGGGTTTTCTCCCGTTCCTGATGTAAAATGGGAAGATGTTGGTGGACTTGATCTCTTAAGACAGGAGTTTGAAGACTATATTATAAGGCCTATAAAATATCCTGAGGATTATGAGGGACCTGAACTTCTAAATAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGGACTTTGTTCAGTGATGCAAGGACTTGTGCACCTTGTATACTTTTTTTTGATGAGGTGGATGCTTTGACAACCAAACGTGGTAAAGAAGGTGGATGGGTTGTTGAACGACTATTGAACCAGTTGCTTATTGAATTAGATGGCGCAGAGAAGCGGAAGGGTGTTTTTGTGATCGGAGCAACAAATAGGCCCGACGTGATGGATCCTGCTCTTTTACGGCCTGGCAGGTTTGGTAGATTTCTTTACGTTCCTCTTCCAAGTCCAGACCAGAGGGTTTTGATATTGAAAGCTCTTGCAAGAAATCGTCGTGTTGATGCCAGTATGGATCTGAGCACCATGGGAAGATCAGAAGCTTGTGAAAATATGAGTGGTGCTGATCTTGCTTTTTTGATGGAGGAAGCAGCGGTATCTGCTATTAGAGAGAACAAAGCCTCAACTGATACAACTCATTATACATCGACCATCAAGCCCCGTCATTTTAACATTGCACTGACTAAAGTCTTTCCCTCTGTGTCTGACAAGCAAAAGCAGTACTACCAGCAGTTGTCAGAGAGGTTTAGCCGATGTTTGCACATAAATGTAAAGGAAAGCAGTGGCAGAGAAAAAAAGGAAGAAAAAGGAAGAAAAGAGGGAAATTAG 2088 0.4377 MGRRNGRRPLRETLFHRVEALFPTVDKIVNYLRSTYPDYQRIKHQTLTRLVQEALHARQQKHHHDEDEEILRKRMQTALTSSSESDEHDGTPSTSTVEPSFDLTKTMLRNAYMGTEEKNVELETGKATSIVNEDEAKQSKGSFSNGGDVEVKGKDVTRFRDLGGIKKVLEELNRTLMPFYHPHVTRELGIKPTSGILLHGPPGCGKTILAHAIANETGLPFYHISATDVVSGVSGASEENIRELFTKAHRTAPSIVFIDEIDAIASKRENLSREMEKRIVTQLLTCMHQPANNNYVLVIGATNRPDAIDPALRRPGRFDHEIFIGIPDESSREEILLVLTRNVKLERPIDLRKIARCTPGFVGADLESVVNEAGKLAMMRTVDERYIMGEPPEGYLREPWLPEEVDKAAIKMSDFEKAIKKVQPSTRRKGFSPVPDVKWEDVGGLDLLRQEFEDYIIRPIKYPEDYEGPELLNKYVGESELAVRTLFSDARTCAPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAEKRKGVFVIGATNRPDVMDPALLRPGRFGRFLYVPLPSPDQRVLILKALARNRRVDASMDLSTMGRSEACENMSGADLAFLMEEAAVSAIRENKASTDTTHYTSTIKPRHFNIALTKVFPSVSDKQKQYYQQLSERFSRCLHINVKESSGREKKEEKGRKEGN. 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04782 695 SMART AAA_5 192 328 IPR003593 GO:0016887
Seca10g04782 695 SMART AAA_5 365 570 IPR003593 GO:0016887
Seca10g04782 695 ProSitePatterns AAA-protein family signature. 538 556 IPR003960 GO:0005524|GO:0016887
Seca10g04782 695 ProSitePatterns AAA-protein family signature. 296 314 IPR003960 GO:0005524|GO:0016887
Seca10g04782 695 Gene3D - 327 429 - -
Seca10g04782 695 Gene3D - 569 660 - -
Seca10g04782 695 Pfam AAA+ lid domain 349 383 IPR041569 -
Seca10g04782 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 421 IPR027417 -
Seca10g04782 695 FunFam Ribosome biogenesis ATPase RIX7 148 325 - -
Seca10g04782 695 Gene3D - 135 325 IPR027417 -
Seca10g04782 695 Gene3D - 465 568 IPR027417 -
Seca10g04782 695 MobiDBLite consensus disorder prediction 77 102 - -
Seca10g04782 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 668 IPR027417 -
Seca10g04782 695 Pfam ATPase family associated with various cellular activities (AAA) 196 325 IPR003959 GO:0005524|GO:0016887
Seca10g04782 695 Pfam ATPase family associated with various cellular activities (AAA) 467 567 IPR003959 GO:0005524|GO:0016887
Seca10g04782 695 PANTHER AAA-FAMILY ATPASE 351 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04782 Seca-Chr10 109944479 109951287 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04782 409 695 Calmodulin-binding Proteins AT3G56690 35.061 8.24e-49 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04782 K14571 - gmx:100809594 830.476