Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04763 ATGTGGATGGTAGGTTACAACAATGAAGGTGGTGAGTTCAACATGGTTGATCTTGATCATTCATTCAATGGAAGGAAACTTAGGCCTCTCATGCCAACTCCAATCACTTCTCCTTCAACAATAACCACTCCTAGCTTAAGCCACATTCATGCCAACAATTTCTTTTCACCATATCATTATCACCATCTTGCAACAGTGGCAGAGCAGAACAAGAGAGAGCAATGCAATGCTCCACCAGTTGTGGTGAGTTCAAGGTGGAATCCAACCCCAGAGCAACTAAGAGCCTTAGAAGAGTTGTATAGAAGAGGAACAAGGACACCATCTGCAGAGCAAATTCAGCACATCACAGCACAGCTCAAAAGGTTTGGTAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCCAGAGAAAGGCAAAAACGCCGCCGCCAAATGGAATCATCATCAGCTGATCAAGGTCAACAACACCATGATTTTGATACTCCAGAGAAGAAAGATTTAGCTGCAAATAGGACAGTTTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACTCTTGCAGAGGAATCTGTTTCAACACAAAGGGCAGCAAAAGCAGTGGTTGCAGAGTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAATTACAACAAAGAAGAAACTTTTTGGAAAGGAATGCCACGTGGCATATGGTGCAGTTATCTTGTCCTCCTCCTCCACCTGCCACTGCCACCCACCTCATAAACACCCTTCCTAATGCCTCTGCAGCCACTTGTAGTATGGCCACAGTAATAACAACAAGAATAATGGACCCAAACCTCATTAAGACCCATCAAAATCTCACCTTTTCCCTTTCACCTCACCACAGAGAAAATGGTCTTACCAGTTCCACCAGTGATGATGAAGATGAAGAAGATGATATTGATATTGATAATAACTATTTGGAATCCCAAACCCTTCAACTTTTCCCATTAAGGAGTGGTGATGGCATCAGTGATCATAACATTAACAAAGAGACAGAGATATCAGCTTCAGCATTAATGAATGCCAACTTGATCACCCCAAGTCAGTTTTTTGAGTTCCTTCCATTGAAGAACTAA 1131 0.4226 MWMVGYNNEGGEFNMVDLDHSFNGRKLRPLMPTPITSPSTITTPSLSHIHANNFFSPYHYHHLATVAEQNKREQCNAPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLKRFGKIEGKNVFYWFQNHKARERQKRRRQMESSSADQGQQHHDFDTPEKKDLAANRTVFEVEQTKNWAPSTNCSTLAEESVSTQRAAKAVVAECRTDGWLQFDEGELQQRRNFLERNATWHMVQLSCPPPPPATATHLINTLPNASAATCSMATVITTRIMDPNLIKTHQNLTFSLSPHHRENGLTSSTSDDEDEEDDIDIDNNYLESQTLQLFPLRSGDGISDHNINKETEISASALMNANLITPSQFFEFLPLKN. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04763 376 SMART HOX_1 81 148 IPR001356 GO:0003677
Seca10g04763 376 MobiDBLite consensus disorder prediction 296 317 - -
Seca10g04763 376 MobiDBLite consensus disorder prediction 141 168 - -
Seca10g04763 376 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 68 371 IPR044555 GO:0003700|GO:0099402
Seca10g04763 376 Pfam Homeodomain 84 143 IPR001356 GO:0003677
Seca10g04763 376 CDD homeodomain 85 145 IPR001356 GO:0003677
Seca10g04763 376 Gene3D - 81 144 - -
Seca10g04763 376 ProSiteProfiles 'Homeobox' domain profile. 89 144 IPR001356 GO:0003677
Seca10g04763 376 SUPERFAMILY Homeodomain-like 84 150 IPR009057 -
Seca10g04763 376 FunFam WUSCHEL-related homeobox 4 83 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04763 Seca-Chr10 109389076 109392134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04763 1 376 Wox Gene Family AT3G18010 39.206 6.06e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca10g04763 Homeodomain 1.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04763 - - gmx:100819541 478.018