Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04759 ATGATCAGGATAAGTGAAGATGAGTTCAAGATGTACCACTTTATCAGTCGATTAGTTGCATTTGAGTTCTATAATAAGTATGCTCAGAAAAGAGGATTTGCTACTAGAAAATGGAACACAGTTGTAAACAAGGAAGGTAGAGTGTCACAACAAACATTTGTGTGTTTCAGAGAGGGATATCGATTGAAAAAACACTTGAAAAACGAGAATCGTAAGAGGGAGGCGAGAGCAATTACTAGGTGTGGTTGTTTTGCATTTTTGAAAGTTCGATATGCTAGAGATATAAGTCGTTGGATTGTAAAAGCTTTCTCTGATGAGCATAGTCATGAGTTGTTACCTAGGAAATACGAGGGAATGTTGACTTCACACCGAAAGATGAATGAAACAGACATAATGCAAATGAATGCCATGCGTGAAGTTGGTATAGGTGTTACACAAATATATGGGTTAGTGGCAAATCAATCAGGAGGCTATAAAAATGTTGGTTACCGTAAAAGTGATATGTACAATGAAATTTTTAAACAAAGAAGATCTGAGGGTAGTGATGCCAGAGGTGCTTTATCTTATCTTCGAGCATTAGGTCGCAATGATAAGGACCTGTTTTGGTCTCATACTGTGGATGAAGAAGGGAGGCTGAAACATCTATTTTGGAGTGATGGTAGAAGCCAATGTGATTACAAATTGTTTGGTGATGTGCTTGCATTTGATGCAACCTATAGACGGAACAAGTATATGTCACCTCTGGTTGTGTTTGCTGGAGTAAATCATCATAATCAAACCATTGTTTTTGGTAGTGCACTAGTTGCGAACGAAACAGAAGAGACATATGTGTGGTTACTTGAAGAGTTTTTACGTGCAATGAAAGGAAAGGTTCCAATTTCTGTTATTACTGGTGGTGATATTGCGATGAGGAATGCTATCAAGCATGTTTTCCCTTCAGCCCGTCATAGGTTGTGTGCGTGGCATTTACTGAGGAACGCTACTAGCAACATAAGCAACCCTAGGTTCACGGCCAAATTTAAAAGGTGTATGCTAGGTGATTATGAGGTTGGGAGATTTAGAACGAAATGGGAGGAGCTGATTTGTGAGTTTGGTTTGCAGAGCAACCAATGGGTCAGTGAACTGTACAATAAGAAGAAAATGTGGGCTACTGCCCATATACGTGGTAGCTTCTTTGCTGGCTTCAGGACGACCTCTAGGTGTGAGGGCCTTCACTCTCAAGTAGGTAGATATGTTCATTACCGAAATAACTTGAGAGAGTTCTTGAGGCACTTTTTCCAATATTTGGCTTATACTAGGCAGAAAGAGTTGGAGGCTGACTTTGAATCAATAAATGGAGATCCTGTTCTACAAACACCTTTTGATGATATTGAAGCATCTGCGGCAAAGTTGTATAGTAGGAAGGTCTTTATGAAGTTTAGAGTCGTGCTTTGGCGGGCATGTAAGCTGAAGGTTAGTGGATGTGAGCGGACCCCAAACTGTCACATATATATTGTGACAAACAGATCAAGATGTGGAAGAGAGTGGCATATGTCATATGTGGCACAAAATGAAGAAGTCAAGTGTTCTTGTCAGCGGATGGAGTCAATGGGTATCCCATGTGAGCATATTGTTGTTCTTTTACATTACCTCGATATAAAACAATTGCCAAATTCACTTATTTTAGAAAGGTGGACAAAATATGCCAAGCAATCTGTGGATGGTGCTGATTTGGGAACTAGTAGTTTTGGTGGTTCTATGTGGAAGAGTCAAGTGATATCATTGTTGTTTGATTGTTATGAGATGTGCAGACTTGCGGGTAAAAGGATGGACAAATTGGAGGAAACAAGAGGAGTTATTAGGAATCATTTGCAAAGTTTGAAAGTTAATGAAGAAGATGGAAACAATGATGAAGGTAATGATCAGGAAGGGGATGACATTAACCTGAGGGATCCTTCACATGTCAGAAGTAAAGGTTGTGGATCGAGGCAGTCTACAGGTGGAAGTAGAGGCAATAGGAGGACCACTACATGCAGTGTATGCCAAGGTCGTGGTCACAACAAACAGACCTGTCAACTTCGTAGAAGGCACGCACATCCAGAGACAAATGAAACAGCAGGTAGTGGAGATGACATGAATGAGTAA 2124 0.4025 MIRISEDEFKMYHFISRLVAFEFYNKYAQKRGFATRKWNTVVNKEGRVSQQTFVCFREGYRLKKHLKNENRKREARAITRCGCFAFLKVRYARDISRWIVKAFSDEHSHELLPRKYEGMLTSHRKMNETDIMQMNAMREVGIGVTQIYGLVANQSGGYKNVGYRKSDMYNEIFKQRRSEGSDARGALSYLRALGRNDKDLFWSHTVDEEGRLKHLFWSDGRSQCDYKLFGDVLAFDATYRRNKYMSPLVVFAGVNHHNQTIVFGSALVANETEETYVWLLEEFLRAMKGKVPISVITGGDIAMRNAIKHVFPSARHRLCAWHLLRNATSNISNPRFTAKFKRCMLGDYEVGRFRTKWEELICEFGLQSNQWVSELYNKKKMWATAHIRGSFFAGFRTTSRCEGLHSQVGRYVHYRNNLREFLRHFFQYLAYTRQKELEADFESINGDPVLQTPFDDIEASAAKLYSRKVFMKFRVVLWRACKLKVSGCERTPNCHIYIVTNRSRCGREWHMSYVAQNEEVKCSCQRMESMGIPCEHIVVLLHYLDIKQLPNSLILERWTKYAKQSVDGADLGTSSFGGSMWKSQVISLLFDCYEMCRLAGKRMDKLEETRGVIRNHLQSLKVNEEDGNNDEGNDQEGDDINLRDPSHVRSKGCGSRQSTGGSRGNRRTTTCSVCQGRGHNKQTCQLRRRHAHPETNETAGSGDDMNE. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04759 707 SMART 26again6 520 547 IPR006564 GO:0008270
Seca10g04759 707 ProSiteProfiles Zinc finger SWIM-type profile. 513 545 IPR007527 GO:0008270
Seca10g04759 707 Pfam MULE transposase domain 232 326 IPR018289 -
Seca10g04759 707 MobiDBLite consensus disorder prediction 636 650 - -
Seca10g04759 707 MobiDBLite consensus disorder prediction 621 707 - -
Seca10g04759 707 PANTHER OS01G0519700 PROTEIN 20 565 - -
Seca10g04759 707 Pfam FAR1 DNA-binding domain 22 113 IPR004330 -
Seca10g04759 707 Pfam SWIM zinc finger 516 544 IPR007527 GO:0008270
Seca10g04759 707 MobiDBLite consensus disorder prediction 651 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04759 Seca-Chr10 109363923 109366046 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca10g04759 MULE 2.1e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04759 - - tpra:123913749 695.271