Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04756 ATGGAAGATTCAGCACCAAAGTCTCTGATGGAGAACCTGTTAGGCCTTCTGAGGGTTCGCGTCAAGCGTGGCGTCAACCTTGCCGTTCGTGATGTTCGTAGCAGCGATCCTTATGTTGTTCTCAAGATGTATAACCAGCATAACTTTTTTGTTTTTGTTCATTTTGTTTTTCAGAAACTTAAGACTCGTGTGATTAAAAAGGATGTTAATCCTGAGTGGAATGAAGACCTTACGCTTTCTATCATAGATCCTAATCACTCAGTATTGCTGACTGTGTATGATCATGACACTTTTAGTAAAGATGACAAAATGGGAGATGCAGAATTTGAAATCTTTCCCTTTATTGAAGCCTTGAAGATGAATGTAACTGGCCTTCCAAATGGTACTGTGGTCAAAAGAATACAACCAAGCAGGCAAAACTGCCTGGCAGATGAGAGCTGTATCTATTATAGCAATGGCAAAATTATCCAAGATATGATCCTTAGATTGAGAAATGTGGAATGTGGTGAAGTGGAAATCCAATTGCACTGGATTGATCTTCCTGGTTCTAAGGGTTTATGA 561 0.3957 MEDSAPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYVVLKMYNQHNFFVFVHFVFQKLKTRVIKKDVNPEWNEDLTLSIIDPNHSVLLTVYDHDTFSKDDKMGDAEFEIFPFIEALKMNVTGLPNGTVVKRIQPSRQNCLADESCIYYSNGKIIQDMILRLRNVECGEVEIQLHWIDLPGSKGL. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04756 186 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 12 184 IPR044562 -
Seca10g04756 186 SMART C2_3c 16 123 IPR000008 -
Seca10g04756 186 Pfam C2 domain 15 111 IPR000008 -
Seca10g04756 186 CDD C2_ArfGAP 14 169 - -
Seca10g04756 186 Gene3D C2 domain 11 184 IPR035892 -
Seca10g04756 186 ProSiteProfiles C2 domain profile. 1 127 IPR000008 -
Seca10g04756 186 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 8 114 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04756 Seca-Chr10 109318237 109320816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04756 59 186 C2H2 Transcription Factor Family AT1G70790 62.308 2.52e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04756 - - gmx:100810504 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02324 6 85108351 85110740 Seca10g04756 10 109318237 109320816 ECH
Seca10g04756 10 109318237 109320816 Seca10g04756 10 109318237 109320816 ECH
Seca12g06994 12 161906948 161908545 Seca10g04756 10 109318237 109320816 PCT