Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04716 ATGCAGTGGTCATTCTCAAACAAGGTCTCAGCCCTTCCTCAATTCCTGTCCTTCAAGACAACTCAGGAAGATAGGCCAAGAAACACTATTCTTGATCCACTAGCTTCATCTGGATACATGACCATCTCAACTAAAGATGCTTTTGACTCTAACCAGAAACCATTCATGGGTGTGACACAGAAAAATTTGTCAATAGGCAAGCAAGCAGGAAACAAACTTGGAATGACAGTTTATCCTCTGCAATGTTCTGATGCACAGTCAGCTTGCCTTCAGGAAACAAGAATATTTTCAGTTTCCAACCAATGTAATCAAGTGAGTCCTGTTCTTCAATCTAATCTGGCTACTACAGGATTGAACATGGTCAGTTCAGTCATAAAACCACAACCTCTTTCCAAATCCTCTGGAACACCTGTATCTGTTCATCCATCAATAGGTTCCATTGTTGGCTCTACTGACTTAAGGAATTGTTCCAAATCCTCTGGCACACCTGCCCAGCTGACCATTTTCTATGCTGGTTCAGTATGTGTGTTTGATGACATCTCTCCTGAGAAGGCACAGGCTATCATGTTATTAGCTGGAAATAGGGCTACTCCAATTCAAAACATATCAGTTTCAACAACTAAATTGCAGCCAGAAATCTCTTTTCCCTCCAAAAATGATGGTTTTACAATAAGCCAATCCTATCCCTCACCCTCACCCATGCCAAGCCCTCTCCCACCAATAGCCTCTCATGCCAGTTCTCAGCCTAGGGGAAGATCTTCTAGCAACAATGAACTTGCAATAATAAGACCAGTAGGATCTTCAACAGCTCCTACTAACCATTTGGAATCTCCTATTGTTGTTGGTTCTGTAGGATGTGCTGCTAAAAAAATGGTTCAACCAGTATGCTTGCCTCAGGCACGTAAAGCATCCTTGGCTCGGTTTTTGGAGAAGCGAAAGGAAAGAGTAATGAGCACATCACCATACTATATGTGCAAGCAATCACCTGAATGCAGCAGCACTCCTGGATCAGACAGTGTTAGTTTCTCCATGGATTTCTCTGGTTCCTGTCCTCTACCAGCCACTAACTAG 1071 0.4286 MQWSFSNKVSALPQFLSFKTTQEDRPRNTILDPLASSGYMTISTKDAFDSNQKPFMGVTQKNLSIGKQAGNKLGMTVYPLQCSDAQSACLQETRIFSVSNQCNQVSPVLQSNLATTGLNMVSSVIKPQPLSKSSGTPVSVHPSIGSIVGSTDLRNCSKSSGTPAQLTIFYAGSVCVFDDISPEKAQAIMLLAGNRATPIQNISVSTTKLQPEISFPSKNDGFTISQSYPSPSPMPSPLPPIASHASSQPRGRSSSNNELAIIRPVGSSTAPTNHLESPIVVGSVGCAAKKMVQPVCLPQARKASLARFLEKRKERVMSTSPYYMCKQSPECSSTPGSDSVSFSMDFSGSCPLPATN. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04716 356 ProSiteProfiles Tify domain profile. 159 194 IPR010399 -
Seca10g04716 356 SMART tify_2 159 194 IPR010399 -
Seca10g04716 356 MobiDBLite consensus disorder prediction 214 229 - -
Seca10g04716 356 Pfam tify domain 162 193 IPR010399 -
Seca10g04716 356 MobiDBLite consensus disorder prediction 214 256 - -
Seca10g04716 356 Pfam Jas motif 298 323 IPR018467 -
Seca10g04716 356 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 97 334 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04716 Seca-Chr10 108390744 108394412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04716 1 328 Tify Gene Family AT3G17860 39.823 2.95e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca10g04716 tify 8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04716 K13464 - gmx:100807288 489.96