Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04712 ATGCCAATGCAACCTCACAAATTGTTCACTCTCTCTTCTTCCACCATCACCATTGTCTTCCTTCTTCTTCTCCTCCCTCTCGCCAAACCAGATCTCTCCGCCGAGCGTGCCGCCCTCTTATCCCTCCGCTCCGCCGTCGGCGGCAGAACCCTCCTCTGGAACACCACCTCCACCACCCCCTGCACCTGGTTCGGCGTCCATTGCGACCCAAACAACACTCATGTCGTCCAGCTTCACCTCCCCGGCGTCGCCCTCTCCGGCGACCTTCCCGCCGGCGTGTTCTCCAAGCTCCCTTACCTCCGCACCCTCAGTCTCCGCTTCAACGCCCTCTCTGGCCCCCTTCCCTCCGACCTCGCTGCTTGCTCTTCCCTCCGTAACCTCTACCTCCAAGAGAACCTTCTCTCCGGCGAAGTTCCGGCGTCTTTGTTCCGCCTCACTGGTCTCGTTCGCCTTAACTTGGCCTCCAACAACTTCTCCGGTCCGATTCCGGTAGGGTTCCGGAACCTGACCCGGCTCAGGACACTGTTTCTCCAGAACAACCGGTTCTCCGGTTCGTTGCCTGAGTTGAACCGGGGCGAGCTCGCTCAGTTCAATGTCTCCAACAACATGCTAAACGGTTCTGTGCCTGAAAAGTTGCGAACTTTTTCTAAAGATTCGTTTTTGGGTAATTTCCTCTGTGGGAAGCCCCTTGAGCCTTGTCCTGGGGATGCAGATAGTGGGAACGGTGCTAATGGGACTTCAAGTGCGGTTGGAGACAGTGAAGGGATGAGAATGAAGGAGAAGAGCAAGTTGTCTGGTGGTGCTATTGCTGGGATTGTTATTGGGTCTGTGGTGGTGCTTTTGTTGGTTGTTTTTGCTTTGATTCTTTTGTGCAGGAACAAGAATGGTGAAAAGACTAGTTCTGTTGATGACGTGGCAGCAACTGTGAAGCATTTGGAGCAGGTGGAAATTAGGGGTGAGAATGTTGAGAATGGTAATGGGTACCCGGCGGTGGCGGGGAATGGTGGTGGTAGGGGTGAAGGGATTGGTGGTGGTGGAGGTAAAAAGTTGGTGTTTTTTGGTAATTCCGGTAAGGTGTTTGATTTGGAGGATTTGCTTAGAGCTTCTGCTGAGGTTTTGGGGAAAGGGACGTTTGGGACTGCTTATAAGGCTGTTTTGGAGGTTGGGCCTGTGGTTGCTGTGAAGAGGTTGAAGGATGTGACTATTTCTGAGAAAGAATTCAAGGAGAAGATTGAAGGGGTTGGAGCAATGGATCATGAAAATTTGGTCCCTCTCAGGGCTTACTATTATAGCAGGGATGAGAAGCTTCTTGTTCATGATTACTTGCCAATGGGAAGCTTATCTGCACTTTTGCATGGAAACAAAGGAGGAGGTAGGACACCACTGAATTGGGAAATCAGATCAGGCATTGCACTTGGAGCTGCTAGAGGCATTGAGTACCTACATTCACAGGGGCCTAATGTTTCTCATGGAAACATAAAGTCATCTAACATCCTCCTAACCAAGTCCTATGATGCCAGAGTATCTGATTTTGGCCTTGCACACCTTGTTGGTCCCTCATCCACACCCAACAGGGTTGCTGGCTACCGTGCTCCTGAGGTAACTGATCCTCGCAAAGTAACTCAAAAGGCAGATGTATACAGCTTTGGTGTGTTGCTCTTGGAACTTCTGACTGGAAAGGCTCCAACTCATGCCCTCTTGAATGAGGAAGGAGTGGACCTTCCAAGATGGGTGCAATCAGTTGTTAAAGAAGAGTGGACTTCAGAGGTCTTTGATCTTGAGCTGCTTAGGTATCAGAATGTTGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCAGTAGATTGTGCAGCCACATACCCTGATAACCGCCCTTCAATGTCTGAAGTGAGACAGCACATAGAAGAGTTACATAGGTCTAGCTTGAAAGAGGGTCAAGACCAAATCCAACAACCTGATTTGATCAATAATCATATAGCTGATATGTCTTCTCAATGA 1995 0.4997 MPMQPHKLFTLSSSTITIVFLLLLLPLAKPDLSAERAALLSLRSAVGGRTLLWNTTSTTPCTWFGVHCDPNNTHVVQLHLPGVALSGDLPAGVFSKLPYLRTLSLRFNALSGPLPSDLAACSSLRNLYLQENLLSGEVPASLFRLTGLVRLNLASNNFSGPIPVGFRNLTRLRTLFLQNNRFSGSLPELNRGELAQFNVSNNMLNGSVPEKLRTFSKDSFLGNFLCGKPLEPCPGDADSGNGANGTSSAVGDSEGMRMKEKSKLSGGAIAGIVIGSVVVLLLVVFALILLCRNKNGEKTSSVDDVAATVKHLEQVEIRGENVENGNGYPAVAGNGGGRGEGIGGGGGKKLVFFGNSGKVFDLEDLLRASAEVLGKGTFGTAYKAVLEVGPVVAVKRLKDVTISEKEFKEKIEGVGAMDHENLVPLRAYYYSRDEKLLVHDYLPMGSLSALLHGNKGGGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVTQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVKEEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAATYPDNRPSMSEVRQHIEELHRSSLKEGQDQIQQPDLINNHIADMSSQ. 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04712 664 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Seca10g04712 664 ProSiteProfiles Protein kinase domain profile. 367 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04712 664 Gene3D Transferase(Phosphotransferase) domain 1 442 660 - -
Seca10g04712 664 Gene3D Ribonuclease Inhibitor 194 233 IPR032675 -
Seca10g04712 664 PANTHER OS05G0588300 PROTEIN 18 640 - -
Seca10g04712 664 SUPERFAMILY L domain-like 48 214 - -
Seca10g04712 664 CDD STKc_IRAK 373 636 - -
Seca10g04712 664 MobiDBLite consensus disorder prediction 235 257 - -
Seca10g04712 664 FunFam pollen receptor-like kinase 1 340 441 - -
Seca10g04712 664 Pfam Protein kinase domain 370 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04712 664 Gene3D Phosphorylase Kinase; domain 1 348 441 - -
Seca10g04712 664 FunFam Probable inactive receptor kinase At1g48480 442 644 - -
Seca10g04712 664 FunFam Probable inactive receptor kinase RLK902 32 190 - -
Seca10g04712 664 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Seca10g04712 664 SUPERFAMILY Protein kinase-like (PK-like) 371 634 IPR011009 -
Seca10g04712 664 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04712 Seca-Chr10 108249174 108251794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04712 31 652 Receptor kinase-like Gene Family AT1G48480 62.362 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca10g04712 Pkinase 1.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04712 - - gmx:100781597 856.67