Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04687 ATGGAATCTAAGAGGAACAGTAGTATTGAGAACTACTACAACAGAGAAAAAGAAGAAGATGAAGAAGAATTAGATGAAGGTGAAGAGGAAAATAGTGAGATCCTCAAGAGAAGAATCTCTAGCCATCCTCTCTATGGACTCTTGGTTGAGGCTCACTTAGATTGTTTGAAGGTTGGTGACATTTCCAACTTGGACAGAGAGCTGAAGAAAGATCAGAAGCAAACAAAGAAGAAACAAAACTTGGGCATGTTCAGCCAGTCTGAGCTTGATCTCTTCATGGAAGCATATTGCTTGGCACTTAGCAAGCTTAAAGAAGCAATGGAGGAACCACAACAAAAGTCCATGGCTTTCATAAACAACATGCATTCACAACTTAGGGAACTCACTAAGGCAACCACTCCTTCATCACCTCCTGAACCAGCATCATCTTCAAGTGAGTGCACATTCAGAAGAAACCCTACAATTTAG 468 0.4081 MESKRNSSIENYYNREKEEDEEELDEGEEENSEILKRRISSHPLYGLLVEAHLDCLKVGDISNLDRELKKDQKQTKKKQNLGMFSQSELDLFMEAYCLALSKLKEAMEEPQQKSMAFINNMHSQLRELTKATTPSSPPEPASSSSECTFRRNPTI. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04687 155 Coils Coil 10 37 - -
Seca10g04687 155 SMART KNOX2_2 79 130 IPR005541 GO:0003677|GO:0005634
Seca10g04687 155 MobiDBLite consensus disorder prediction 1 15 - -
Seca10g04687 155 MobiDBLite consensus disorder prediction 1 31 - -
Seca10g04687 155 MobiDBLite consensus disorder prediction 121 155 - -
Seca10g04687 155 Pfam KNOX1 domain 35 59 IPR005540 GO:0003677|GO:0005634
Seca10g04687 155 Coils Coil 61 81 - -
Seca10g04687 155 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 1 133 - -
Seca10g04687 155 SMART KNOX1_2 33 73 IPR005540 GO:0003677|GO:0005634
Seca10g04687 155 Pfam KNOX2 domain 87 129 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04687 Seca-Chr10 107353641 107358099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04687 33 131 Homeobox Transcription Factor Family AT4G08150 35.238 1.42e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04687 - - aprc:113868091 209.149