Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04680 ATGGCCGTCGTCCGCCGCCACCCCGATCTCCGCCTTCCAGAACTCGCCGAACGCCGTTCCCGCTTCCCTGTCCCCCTTCCCACCACCACCTTCAAACACTCCTCCTCCTCCGCCGCCGCCGCCGCCGGAGACGCCATCGCTCCTGCTGACCTCGAGAAGCTCGCTGTCCTCGGCCACGGAAACGGCGGCACCGTCTACAAGGTCCGCCACAAGGTAACCTCCGCCATCTACGCACTGAAAGTCGTCCACGGCAACTCCGACCCTACCACGCGCCGCCGAGCCATCGCTGAAATCAACATCCACCGACGCGCCGCTGATTGCCCTCACGTCGTCCGCTACCATGGCTCCTTCGAGAAACCTTCCGGTGACGTGGCGATTTTAATGGAGTACGTGGACGCCGGCACACTCGACACTGTACTCAAAAAGAACGGAACATTCTCTGAACAGCGACTCTCAGAGGTGGCGCGTGATGTTCTCAACGGCCTCGCGTACCTCCACGCGCGCAACATCGCTCACCGTGACATCAAGCCCTCGAACCTCCTCGTGGATTCAAAAAACGAAGTTAAAATCGCTGACTTTGGAGTGAGCAAACTCATGTGCCGCGCGCTCGAAGCGTGCAACTCATACGTTGGCACGTGCGCTTACATGAGCCCTGAACGGTTCGACCCGGAAGCTTATGGCGGGAACTATAACGGTTTTGCTGCGGATATTTGGAGCTTGGGTTTGACCCTGTTTGAACTCTACGTGGGTCATTTCCCTTTTCTTCAGGCTGGTCAGAGACCCGATTGGGCTTCTCTTATGTGTGCAATTTGCTTCGGCGACCCGCCAAGCCTGCCGGAGACTGCATCGCCGGAGTTTCGGAGCTTTGTTGAGTGCTGCCTGAAAAAGGAGTCCGGTGATAGGTGGACAGCGTCTCAGCTCTTGACCCACCCATTTGTTTGCAAAGATCCGGAATCTTGTTAA 963 0.5784 MAVVRRHPDLRLPELAERRSRFPVPLPTTTFKHSSSSAAAAAGDAIAPADLEKLAVLGHGNGGTVYKVRHKVTSAIYALKVVHGNSDPTTRRRAIAEINIHRRAADCPHVVRYHGSFEKPSGDVAILMEYVDAGTLDTVLKKNGTFSEQRLSEVARDVLNGLAYLHARNIAHRDIKPSNLLVDSKNEVKIADFGVSKLMCRALEACNSYVGTCAYMSPERFDPEAYGGNYNGFAADIWSLGLTLFELYVGHFPFLQAGQRPDWASLMCAICFGDPPSLPETASPEFRSFVECCLKKESGDRWTASQLLTHPFVCKDPESC. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04680 320 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Seca10g04680 320 FunFam Dual specificity mitogen-activated protein kinase kinase 39 131 - -
Seca10g04680 320 SMART serkin_6 51 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04680 320 CDD PKc_MAPKK_plant_like 50 313 - -
Seca10g04680 320 Gene3D Phosphorylase Kinase; domain 1 42 126 - -
Seca10g04680 320 SUPERFAMILY Protein kinase-like (PK-like) 50 315 IPR011009 -
Seca10g04680 320 Gene3D Transferase(Phosphotransferase) domain 1 127 319 - -
Seca10g04680 320 ProSitePatterns Protein kinases ATP-binding region signature. 57 80 IPR017441 GO:0005524
Seca10g04680 320 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 29 315 - -
Seca10g04680 320 FunFam Mitogen-activated protein kinase 2 133 319 - -
Seca10g04680 320 ProSiteProfiles Protein kinase domain profile. 51 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04680 320 Pfam Protein kinase domain 52 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04680 Seca-Chr10 107109915 107110877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04680 1 316 MAP Kinase Kinase Gene Family AT1G73500 58.307 1.03e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Seca10g04680 Pkinase 7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04680 K20604 - gmx:100804100 535.028