Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04660 ATGCCCCAGAATCAGATTCCTGATCTTTCTCTGCACATTAGTCTCCCAAATAGTGCTCCTTCTTCAATTTGCACTGAAGAAGAAGGGGATTCACCTTTTGACATATGGAGAACAGATGGTGAAGAAGGTCTCAAATCCCATAGTGATGGTTCAATCAAAGGCAACCCTCAAGCAGATACAGAACTTTCCTTAGCTAACCCCACAAATACTCCCTCTGAGGCTGAGAGTCCTTGGAGGAGGCAACAAACAAATATTGTTCATAGTGGGGTATTCTCAGAGGGTGTAAGAGTAAGACCCTTCAATGGAATCCCTCTTTACAATAACAATAAAAACAACAACTTTTCCTCTTTGGAAAACAATTCCTCAATAGAAAGGGACACCAAGCAGTTTTCTCTGTATGCAATTCCTTATAACCCTTCTTGTTCTGCTAATGGTGTAAGACCAATCTCAAGGTTTAATGGGATAACCATGGAGACTCTAAGACCCCAACAGTTTCAATATTTGGATAATCTTCACCATCTTCATCATCATCAGCAGCAACAACAACAGTTTGGGATGAATAATGGAGCTCCAGATTTTGCAAATGGATTTGTAAGGTCAAGAATGTTGGGAAGGCAACAAAGTAAGAGAAACATGAGGGCACCAAGAATGCGTTGGACTAGTTCTCTTCACAATCGCTTTGTTCATGCTGTTGAACTACTTGGAGGCCATGAAAGGGCTACTCCTAAGTCAGTTTTGGAACTCATGGATGTGAAAGATCTAACACTAGCTCATGTCAAGAGCCATTTACAGATGTATCGGACTGTTAAGAACACTGACAAGCCAGCAGCTTCTTCAGATGGAGATGAGGATTTCATGGCCCTAACACCACCCCTTAATCAAAATAAGAACTATTTAACAAACCAAAATGCAAATCTAAATCATGATATGGGTTACACTTCCAGCAATCTATGGGCTAATTCTTCTTCCAGCTTTATCTCAGATGAAAAAATTTTTCGGTTCTCACAATACATATTTGTACTGCAAAAGGGCTCCTTCAAGTCAGAAAGACAGGTAGTAAACCTTCAATGTACTGCTTCTCTTGGTAGAGGAGCACGGATACAAGCTAATCCCCGAGATTTGGATGAGCATAGTCCACAAGAAATCCTATCATCTCAGCATATTGGGAACCTTCCCGAGGGAAACAACTACATACAATCAAGAAGCTTTAAGGATCAAAATTTAGAGTGTCAAAATCCAAGCTTGGAGTTCACCTTAGGGAGATCAAACTGGCCCAACAATGAACATGCCTAA 1293 0.4068 MPQNQIPDLSLHISLPNSAPSSICTEEEGDSPFDIWRTDGEEGLKSHSDGSIKGNPQADTELSLANPTNTPSEAESPWRRQQTNIVHSGVFSEGVRVRPFNGIPLYNNNKNNNFSSLENNSSIERDTKQFSLYAIPYNPSCSANGVRPISRFNGITMETLRPQQFQYLDNLHHLHHHQQQQQQFGMNNGAPDFANGFVRSRMLGRQQSKRNMRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDEDFMALTPPLNQNKNYLTNQNANLNHDMGYTSSNLWANSSSSFISDEKIFRFSQYIFVLQKGSFKSERQVVNLQCTASLGRGARIQANPRDLDEHSPQEILSSQHIGNLPEGNNYIQSRSFKDQNLECQNPSLEFTLGRSNWPNNEHA. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04660 430 MobiDBLite consensus disorder prediction 30 48 - -
Seca10g04660 430 NCBIfam myb-like DNA-binding domain, SHAQKYF class 215 268 IPR006447 GO:0003677
Seca10g04660 430 Pfam Myb-like DNA-binding domain 216 267 IPR001005 -
Seca10g04660 430 MobiDBLite consensus disorder prediction 1 80 - -
Seca10g04660 430 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 7 429 IPR044847 GO:0000976|GO:0006355|GO:0010158
Seca10g04660 430 SUPERFAMILY Homeodomain-like 212 269 IPR009057 -
Seca10g04660 430 MobiDBLite consensus disorder prediction 50 80 - -
Seca10g04660 430 MobiDBLite consensus disorder prediction 1 25 - -
Seca10g04660 430 Gene3D - 214 271 - -
Seca10g04660 430 FunFam Myb family transcription factor 213 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04660 Seca-Chr10 106815814 106827000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04660 196 424 G2-like Transcription Factor Family AT5G16560 46.522 7.41e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca10g04660 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04660 - - lang:109340070 456.832