Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04644 ATGGAAGGAGGAGGAGGACTCTCATTATCATCAGAGAACTGTCTCTATAGAGAGTGCTTGAGAAACCATGCAGCCAGCCTCGGTAGTTACGCCACCGACGGCTGCGGCGAGTTCACCCTCGACGACATGTCTCCCGGCGGCGGCAGCCTCCAATGCGCCGCCTGTGGATGTCACCGGAACTTCCACCGGAAAGTGACGTATCCACCGACGACGAGTCATGTGAGGGAGCCGACGTCAGAGACGACAGGTGACCTGATGGACTATTCCGGCGGCGGCGGAGGAGAGGGAGAGAGGTCGACGATTGGGTCAAAGAAGAGGTTTAGAACGAAATTCACGGCGGAGCAGAAAGAGAAGATGTTGGGGTTTGCGGAGAAGTTAGGATGGAAGCTGGTGAGGAAGGATCTGGATGAAGAGATAGAGAGATTCTGCAAAAGTGTTGGAGTGAGTAGGCAAGTTTTCAAGGTTTGGATGCATAACCATAAGAACTCTAATTCTCTCTCTAATTCTTCCACTGCCAATGCCTCCTCTCTCACCCAGTAA 540 0.5296 MEGGGGLSLSSENCLYRECLRNHAASLGSYATDGCGEFTLDDMSPGGGSLQCAACGCHRNFHRKVTYPPTTSHVREPTSETTGDLMDYSGGGGGEGERSTIGSKKRFRTKFTAEQKEKMLGFAEKLGWKLVRKDLDEEIERFCKSVGVSRQVFKVWMHNHKNSNSLSNSSTANASSLTQ. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04644 179 SUPERFAMILY Homeodomain-like 91 162 IPR009057 -
Seca10g04644 179 FunFam Zinc-finger homeodomain protein 2 93 166 - -
Seca10g04644 179 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 16 64 IPR006456 -
Seca10g04644 179 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 16 65 IPR006456 -
Seca10g04644 179 MobiDBLite consensus disorder prediction 68 101 - -
Seca10g04644 179 MobiDBLite consensus disorder prediction 68 85 - -
Seca10g04644 179 NCBIfam homeobox domain, ZF-HD class 104 162 IPR006455 -
Seca10g04644 179 Gene3D - 90 168 - -
Seca10g04644 179 Pfam ZF-HD protein dimerisation region 14 66 IPR006456 -
Seca10g04644 179 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04644 Seca-Chr10 106482120 106482659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04644 16 163 ZF-HD Transcription Factor Family AT4G24660 45.833 9.98e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca10g04644 ZF-HD_dimer 5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04644 - - jre:109020973 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g07022 12 162114459 162114956 Seca10g04644 10 106482120 106482659 PCT