Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04642 ATGCCACTTCTGTCACCAATAAAAGAAAGAGAAGGCCTGCAGGAACTCCAGGATCCAGATGCAGAGGTGGTGTCTCTGTCACCAAAGACTTTGTTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAAGGATTCCAGAGGGACCAAAACCTTCAGATGCATAGAAGGAGGCACAAGGTACCATGGAAGCTCTTGAAGAGAGAGACACCTGTGGTGAGAAAAAGAGTGTTTGTGTGTCCTGAACCAACCTGTTTGCACCATGATCCTTGTCATGCTTTAGGTGACCTTGTTGGGATAAAGAAACATTTCAGAAGGAAACACAGTAATCACAAACAATGGGTCTGTGAAAGATGCTCTAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACTTGTGGCACCAGAGGACACTCTTGTGATTGTGGTCGTGTTTTCTCAAGGGTGGAGAGCTTTATTGAGCACCAAGATGCTTGTAACATGGGAAGACTCAGGCCAGAATCTCAACCATCACTACAACCACCAGCTGCATGTTTATCAAGAACAGCTTCAAGCCCAAGCCCATCAAGTGAAACAAACTTCAGCACATGGCAAACAAAACTTCATCAGGTAATGCCAAAAAAACCAATAGATAATCATCAAACCAAACTATTCATCAACCCTATTGCTGAAACCTCATCCAAGAACCTCAAACTCCACCCAAATTTAGAACTTCAACTCTCCACCACCAACAACACCAACATATCAAACTCAAACCCCATTCTTGGTTTACCATCACAAGAAAAAGATCATGAGAATGTTGTTAACCATTCAACCCAATTGCAACTCTCAATTGGGTCATCAGATATGAGTGGTGAGAAGAATGAGTCAAACAATAAGGAAAGCAGCAACACAATAAGCAGTGAGAATAACAACAACATGGGTAATTTGTTGAGGGTTCAAGAACAAGCAAGGGAGCATTTGAGGATAGCTATGGCAGAGAAAGCTTATGCTGAGGAAGCAAGGAAACAAGCAAAGAGACAGATTGAACTTGCGGAACAAGAGTTCACAAATGCAAAGAGGATAAGACAACAAGCACAAAGTGAACTTGATAAAGCATATGCCTTGAAAGAACATGCAATGAAACAAGTGAACTCTACCATGCTTCAAATCACTTGTCATGCTTGTAAACAACAGTTTCAAGCACAAGATCATGAGAATTCATTGGTGTTAAGCTACATGTCTTCTGCTATAACCACGGAAGGTGGTGGAGAAGTAGAAAATGATAATGGAAAAGATCATGCCAAAACAAACTAG 1305 0.4153 MPLLSPIKEREGLQELQDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPSLQPPAACLSRTASSPSPSSETNFSTWQTKLHQVMPKKPIDNHQTKLFINPIAETSSKNLKLHPNLELQLSTTNNTNISNSNPILGLPSQEKDHENVVNHSTQLQLSIGSSDMSGEKNESNNKESSNTISSENNNNMGNLLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQSELDKAYALKEHAMKQVNSTMLQITCHACKQQFQAQDHENSLVLSYMSSAITTEGGGEVENDNGKDHAKTN. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04642 434 MobiDBLite consensus disorder prediction 272 309 - -
Seca10g04642 434 MobiDBLite consensus disorder prediction 246 309 - -
Seca10g04642 434 MobiDBLite consensus disorder prediction 246 260 - -
Seca10g04642 434 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 59 IPR013087 -
Seca10g04642 434 Coils Coil 324 379 - -
Seca10g04642 434 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Seca10g04642 434 MobiDBLite consensus disorder prediction 167 197 - -
Seca10g04642 434 Gene3D Classic Zinc Finger 15 77 - -
Seca10g04642 434 Gene3D Classic Zinc Finger 99 174 - -
Seca10g04642 434 FunFam protein indeterminate-domain 12-like 16 84 - -
Seca10g04642 434 Pfam Zinc finger, C2H2 type 37 59 IPR013087 -
Seca10g04642 434 MobiDBLite consensus disorder prediction 176 197 - -
Seca10g04642 434 SUPERFAMILY beta-beta-alpha zinc fingers 34 60 IPR036236 -
Seca10g04642 434 SMART c2h2final6 114 141 IPR013087 -
Seca10g04642 434 SMART c2h2final6 37 59 IPR013087 -
Seca10g04642 434 SMART c2h2final6 78 108 IPR013087 -
Seca10g04642 434 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 10 377 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04642 Seca-Chr10 106402880 106405707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04642 18 424 C2H2 Transcription Factor Family AT2G01940 57.007 1.39e-141 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g04642 zf-C2H2 0.0041 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04642 K25871 - gmx:100800187 617.846