Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04634 ATGGATCAGTCACCTTCCTCCTCCTCTTCCTTCACCTATGATGTATTCCTTAGCTTTAGAGGCACTGATACTCGCCATGGTTTTACTGGCAATCTCTGGAAAGCACTTTGTGGAAAGGGAATCCACACCTTCATTGATGATGAGGAACTTCAAAGAGGACAAGAAATCACACCATCACTTCTCAAAGATATTGAAGACTCCAAAATTGCCATCATTGTGCTCTCTGAGAATTATGCATCTTCATCTTTTTGCTTAGATGAACTTTCAAAGATCATTGATTGCATCCAGGGAAAGGGTCGATTGGTTTTGCCAATTTTTTATAATGTGGATCCTTCTCATGTGCGAAAACAGAAAGGGACTTTTGGAGAGGCAATGACTATGCATAAGAAGAACTTCAATGGTAACATGGATAGGTTGCTGAAATGGAAGACAGCTCTAGAGCAAGTAGCCAACTTGTCTGGTTGGCATTTCAAACTTGGCAGGAATGAATATGAACATGAGTTTATAACGAAGATTGTTAAAGTGGTTTCCAACAAGATTAATCGTGTTCCTTTACATGTTGCGGATTACCCAGTTGGATTGGAATCTCAAGTGCTAAAAGTGAACTTGCTTTTGGATGTTGCATATGATGATAGAGTCCACATGGTAGGGATCTGTGGAATTGGAGGAATGGGTAAAACAACTCTTGCTCGAGCTGTTTATAATTCTATTCCTGACCATTTTGAAGGCTTATGTTTTCTTGATAATGTGAGAGAAAATTCAATTAAACATGGATTGGAACATCTCCAAGAGATGCTTCTTTTTGAAATACTTGGAGGGAAGGATATTAAGATCGGAAGTGTTAATAAAGGAATTTCAATAATAAAGCATAGGCTACAGAAAAAGAAGGTTCTTTTGATTTTGGATGATGTTGATGAATTGGAGCAATTGAAGGTTATGGCTGGAGGACTCAATTGGTTTGGTCCTGGCAGCAGAGTAATCATTACCACTCGGGACCGACATTTGCTTGTAGCACCCGGGGTTAAAAAAATCTATAAGGTACATGGGTTAAATAAGAATGATGCTCTTGATTTGTTTATGAGGAATGCTTTTAAAAATAAGAAAGTTGATCCAAGTTACAAGGAAATTTCAAACCGTGCAGTGACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCCAACTTGTGTGGAAAAGGCATAAAAGTATGGAAATCTACATTAGATCGGTATGAAAGGATTCCTCCTAAAGATATCCAAAAGATACTAAAAGTAAGCTATGATGGTTTGGAGGAAGATGTGCAGAGTGTTTTCCTTGACATTGCATGTTGTTTCAAGGGATGTTATTTGGAAGAGGTCCAAAATATGCTTCATGGTCATTATGGTTATTGCATAGAACTTCATATTGCAGTGTTGGTTGAAAAATCTCTCATAAAGAGTAGTCGGAGGAATACTGTGACACTGCATGACTTGATAGAGGACATGGGTAAAGAAATTGTCCGACAGGAATCACCGGAAGAGCCTGGGAAGCGTAGTAGATTATGGTTCACTAAAGATATAGCTCAGGTTTTAGAAGACAAGACGGGCACTGGTAAAATTCAAATGATATCTATGGATTCCCCCTTGGTTGAAGAAATAGAATGGGATGGACATGCCTTCGAGAAGATGGAAAACCTCAAAACACTTATTGTCAGAAATGGTTGTTTTTCCGAAGACCCCAAACATCTTTCAAATAGTCTGAGAGTACTGGAATGGAAGGGATATCCTTTACAGTATTTTCCATCTGATTTTCATGCAAAGAAACTTATCATATGCAAGTTGCCCAATAGTTGCTTCACGTCATTCAAGTTTGCTGGTTCATTGAAGAAGCAATTCGTGAATTTGAAAGATCTAAATTTTGACGAATGTGAATATTTAAAAAAGATACCTGAAGTATCCGCTCTGAAAAATTTAGAAAATTTCTTATTTCGAAATTGTGTGAACTTAACTAGAATTCATCATTCGGTTGGGTCACTGGATAAACTAAAAGTCTTGAGAGCTAGTGGTTGCAGCAGGCTTAGGAGTTTTCCACCCATCAAGTTAACCTCTCTTGAGGATCTAGACCTTTCACAGTGCAATAATTTCACAACTGTTCCTGAATGCATAAAAAAATTTCACTTTTTAGAGAAGCTATATTTGGATAATTGCAAGCATCTTGAAGAAATTAGAGGGATTCCACCAAACATGGAATATCTCTCTGCAATGAACTGCAAATCCTTGACTTCCTCGAGTAGAAGCATGTTATTGAATCAGGAACTCCATAAGGCTGGAAATACCGAGTTTTGTTTGCCAGGACTAAGAATTCCAGAGTGGTTCACGCACCGAAGTAGTGGCCAGTCAATTTCTTTATGGTTTCGTAATAAATTCCCTGCCATAACTCTCTGCCTTGTTAGTCAACTGATGCATAAATGGGGACCCATTAGGTATTCTGATGTTATTGTAGTCACTCTGACCATCAATGGCTGTGAACATTATAATATACTCTCTTTCATGTTTCCGGATCATACAAATCTTGTTGATTTTCAGAAGCTTATATCTGCAAATAAACTAGATATAGCATTTTCAGAAGATAAATGGAACCATGCAGAGATTGCATTTAAGGCTTGGAACAATGTCCTAATCCATGTAGAAAGTGGAATCTGTGTATTGGAAAAGAAATGTATCATGGAGGATGTTCGATTCACTGATCCTTGTAGGAAAAGAAAATTAGAGGATGATCTCAACAGATTAGAATCACAAAACCACCTGTTGCTGAAAAAGCATAGAATAGAGGGCATTCAAGTTGTGGAGGAGCAGCAACTTTACGCTTTATTATCACTGCAACAACTAGTGTCAATGGTATTAAGGCGGATAAGGGGCACCGCTAGTGTCAAAGGTAAATTCACCTTTGGTGTGCTATCACAGTAA 2952 0.3811 MDQSPSSSSSFTYDVFLSFRGTDTRHGFTGNLWKALCGKGIHTFIDDEELQRGQEITPSLLKDIEDSKIAIIVLSENYASSSFCLDELSKIIDCIQGKGRLVLPIFYNVDPSHVRKQKGTFGEAMTMHKKNFNGNMDRLLKWKTALEQVANLSGWHFKLGRNEYEHEFITKIVKVVSNKINRVPLHVADYPVGLESQVLKVNLLLDVAYDDRVHMVGICGIGGMGKTTLARAVYNSIPDHFEGLCFLDNVRENSIKHGLEHLQEMLLFEILGGKDIKIGSVNKGISIIKHRLQKKKVLLILDDVDELEQLKVMAGGLNWFGPGSRVIITTRDRHLLVAPGVKKIYKVHGLNKNDALDLFMRNAFKNKKVDPSYKEISNRAVTYASGLPLALEVIGSNLCGKGIKVWKSTLDRYERIPPKDIQKILKVSYDGLEEDVQSVFLDIACCFKGCYLEEVQNMLHGHYGYCIELHIAVLVEKSLIKSSRRNTVTLHDLIEDMGKEIVRQESPEEPGKRSRLWFTKDIAQVLEDKTGTGKIQMISMDSPLVEEIEWDGHAFEKMENLKTLIVRNGCFSEDPKHLSNSLRVLEWKGYPLQYFPSDFHAKKLIICKLPNSCFTSFKFAGSLKKQFVNLKDLNFDECEYLKKIPEVSALKNLENFLFRNCVNLTRIHHSVGSLDKLKVLRASGCSRLRSFPPIKLTSLEDLDLSQCNNFTTVPECIKKFHFLEKLYLDNCKHLEEIRGIPPNMEYLSAMNCKSLTSSSRSMLLNQELHKAGNTEFCLPGLRIPEWFTHRSSGQSISLWFRNKFPAITLCLVSQLMHKWGPIRYSDVIVVTLTINGCEHYNILSFMFPDHTNLVDFQKLISANKLDIAFSEDKWNHAEIAFKAWNNVLIHVESGICVLEKKCIMEDVRFTDPCRKRKLEDDLNRLESQNHLLLKKHRIEGIQVVEEQQLYALLSLQQLVSMVLRRIRGTASVKGKFTFGVLSQ. 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04634 983 Gene3D - 349 433 IPR042197 -
Seca10g04634 983 Pfam C-JID domain 778 882 IPR045344 -
Seca10g04634 983 Gene3D - 10 180 IPR035897 -
Seca10g04634 983 SUPERFAMILY L domain-like 504 801 - -
Seca10g04634 983 Pfam NB-ARC domain 210 432 IPR002182 GO:0043531
Seca10g04634 983 SMART AAA_5 212 350 IPR003593 GO:0016887
Seca10g04634 983 SUPERFAMILY "Winged helix" DNA-binding domain 420 527 IPR036390 -
Seca10g04634 983 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 155 IPR035897 -
Seca10g04634 983 Coils Coil 915 935 - -
Seca10g04634 983 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 182 - -
Seca10g04634 983 ProSiteProfiles TIR domain profile. 11 180 IPR000157 GO:0007165
Seca10g04634 983 Gene3D - 181 343 IPR027417 -
Seca10g04634 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 443 IPR027417 -
Seca10g04634 983 PRINTS Disease resistance protein signature 215 230 - -
Seca10g04634 983 PRINTS Disease resistance protein signature 694 710 - -
Seca10g04634 983 PRINTS Disease resistance protein signature 291 305 - -
Seca10g04634 983 PRINTS Disease resistance protein signature 384 398 - -
Seca10g04634 983 SMART till_3 12 152 IPR000157 GO:0007165
Seca10g04634 983 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 756 IPR044974 GO:0006952
Seca10g04634 983 Gene3D Ribonuclease Inhibitor 695 772 IPR032675 -
Seca10g04634 983 Gene3D Ribonuclease Inhibitor 546 694 IPR032675 -
Seca10g04634 983 Pfam TIR domain 13 182 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04634 Seca-Chr10 106181229 106185275 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04634 5 762 WRKY Transcription Factor Family AT4G12020 29.419 3.54e-76 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04634 - - gmx:100814962 908.286