Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04628 ATGCACATGGAGAAGACGAGAGGGGTGAGAAAAGGCGCATGGACATATGAGGAAGACAACCTGCTCAAGGCTTGCATTAACAAGTATGGGGTAGGAAAATGGCATTTAGTTCCTGAAAAAGCAGGATTGAATAGGTGCCGGAAAAGTTGTAGATTAAGGTGGTTGAATTATTTAAATCCCAACATCAACAGAGCAAGCTTTGCTGAGGATGAAGTTGATATGATTCTAAGGTTACATAATCTCCTAGGGAACAGATGGTCATTGATTGCTGCAAGGCTTCCGGGTAGGACAGCTAACGATGTGAAGAACTACTGGCACGCACACTTGAGCAAGAAGAAGGTGACCTCTAACTATAACAAGGAAGACAAGAAAGAAAAACATAAACCAATAAAGGAAACGATGAAATTGAAACCTCATGAAATTATAAAACCTCGACCACGGACATTTTCAAATAATTCACAATGGTTGAAGGGGAAACAGATTCTTTCAAATAATGATGGTGTTATGCCTCTAGTGGCTTCAAATGATGATAATGTTACTACAAAGTGTGACACACAGACAACTATGCTCCCACATGGTGATGCACAAGCATCTCTTGGTAGTGCTCCACAATCTACAATGTGGTGGGAGAGTTTGTTAAATATCGATGACGACAATAATGTCGGCAATGAGAAAGTTGGTACATGCTCTTTATCAAGTGAGAATTCCATTGTGGAGTTTCCAAATGCGGGAAACTTCTTTACCCAAGGCGCCATTGGTGGTGACTGTTTATGGGATTCCGACTTTTGTGATTTCAATGATCTTTGGGATCTTTGA 816 0.4069 MHMEKTRGVRKGAWTYEEDNLLKACINKYGVGKWHLVPEKAGLNRCRKSCRLRWLNYLNPNINRASFAEDEVDMILRLHNLLGNRWSLIAARLPGRTANDVKNYWHAHLSKKKVTSNYNKEDKKEKHKPIKETMKLKPHEIIKPRPRTFSNNSQWLKGKQILSNNDGVMPLVASNDDNVTTKCDTQTTMLPHGDAQASLGSAPQSTMWWESLLNIDDDNNVGNEKVGTCSLSSENSIVEFPNAGNFFTQGAIGGDCLWDSDFCDFNDLWDL. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04628 271 Gene3D - 11 63 - -
Seca10g04628 271 FunFam Myb transcription factor 11 63 - -
Seca10g04628 271 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 174 - -
Seca10g04628 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 62 IPR017930 -
Seca10g04628 271 SMART sant 63 111 IPR001005 -
Seca10g04628 271 SMART sant 10 60 IPR001005 -
Seca10g04628 271 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Seca10g04628 271 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Seca10g04628 271 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Seca10g04628 271 Gene3D - 66 137 - -
Seca10g04628 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Seca10g04628 271 CDD SANT 69 109 IPR001005 -
Seca10g04628 271 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
Seca10g04628 271 CDD SANT 13 58 IPR001005 -
Seca10g04628 271 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04628 Seca-Chr10 105970444 105972275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04628 4 216 MYB Transcription Factor Family AT1G66370 49.302 2.50e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g04628 Myb_DNA-binding 9.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04628 - K09422 tpra:123921946 283.493