Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04627 ATGGCAGACACAAATTCTGTTGAAGTGATTTTGAACTTTCTGAGGAGAAATCAGTTCACAAGAGCTGAGGCAGCTTTGCGCAGTGAGCTTAGTAACCTTTTTGATGGAAATGGGTTCCTTCAGAAGCCTGCATTGGAAGAAAAGGCCTTGTGTGATATATCGCAGAATGATAAGGGGAAGCCTGTGGTAGAAAAGCAAGGGTTGGATTCTCGTGATAGTGTTGAAGTTTCTAAAGAACTGATTGTGAAGGAAATAGAATGTGGGACTGGTAGAAATGCTGTTGAAAGCAAATTGAAAACTGTTGCTCCCACTGAGGAAAGGAATAAATCTAATGAAGTGGTTGGAACGAGTGATAAAAACTTCACTTTTTTGAAGAGTTCGGAGGATGGTGTGTTTGATCTACAGTCATGGAAGATTAATCTCAGCAATGGTCCTGTGCAGCCTTACCAAAATGATGGTGGAAGCAGGGCTAATAACACTTTGAAGGCCCCAATATCTCAGCAATCAAAATCTCAAATGAGTGAAACCCCTAATGCTGCTAACAGTAATGCAAAATCTGGGGAGGAAAATAATGTACCTGCTGAGAAAAAAACCTTGTGGCTTGGAAGTAGTGGTAAAGCCTCTATGGAACCAAAGTGTGACCTTGTTCAAAGCAAAGAATCTAGGGAACTTGATCGGCAGCTTAAATTTAATAGTTCATCTCTCAAAGAGAATTTGGCAGATAATGTCTTGTCAAGAACTGATGAGAATGTGAATTCATCTTCAGACGTATGGAAAGATTGTTCAGTCAAGACTGTTTTACCTTTCTCAAAGGGGGACATGTCTACTAGTTATAATGGTTCAACTTATTCTGACAAAAAAGAGGAAAAGAGAAGGGCAGAGATCAGTGATGCTAGGGCATATATAAAAGAGCAGGTGGATGAAGTGGGCAGAGCTTTTTACTTAGGGAAGTTGCAAAGCAGTTCTGAACAGAATACCATTGGCAGCTTAAGTTTTCCTCTTGCACTGGAGAAGCAAAAAGAAGAGTTTCCTAGGCTTCCTCCTGTAAAAATCAAGTCAGAAGATAAGCCCTTGACTATTAATTGGGGGGAGAAGTTTGAGTCTGATGGTATGGCTGCAAAACTCGCCGGTGCTGACAGCACTTTACTTATTGGGTCATATCTGGATGTTCCTATTGGACAGGAAATCAAAACGGCAGGTATGAGGAAGGCTACAGGGGGAAGTTGGCTGTCTGTAAGTCAAGGGATTACAGAGGATACATCTGATCTTGTTTCAGGTTTTGCAACAGTTGGTGATGGGTTGAGTGAATCTGTTGATTATCCAAATGAATATTGGGACTCAGATGAATATGATGACGATGATGACGTTGGGTACATGAGACAACCTATTGAAGATGAGGCCTGGTTTTTGGCACATGAAATTGATTACCCTAGTGACAACGAAAAGGGTACTGGGCACGGAAGTGTGCCAGATCCTCAGGAAAGAGGTCCAGCCAAAGATGAGGATGACGATCAATCTTTTGCTGAGGAGGATTCTTACTTCTCTGGTGAGCAATATATTCCAGGAAAGAATGTTGAGCCTGTCACTGCTTCAGATGATCCTATCGGTCTAACTGTTACTGAAATGTATGGAAGGACTAATGGTAATGATTTAATGGCTCAATATGATGGACAATTGATGGATGTAGAAGAACTGAATCTGATGCATGCAGAACCTGTCTGGCAGGGCTTTGTCAATCAGACTAATGATCTCATCATGCTGGGAGATGGAAAGGTTCTTAATCATAGTGGGAGATCGCGACTTGAGGACATGGAAGATGATCAGCATGGTTCAGTTAGGTCAATTGGGGTGGGGATCAACAGTGATGCCGCTGATATTGGCAGTGAAGTGCATGGAAGTTTGATTGGTGGTAGTAGTGAAGGGGATTTAGAATATTTCCGTGATCATGATGGTGCACTTGGGGGCTCCAAACACACTCATCATGATTTGGATAAGAATTCTATTAACAAATCATTCCAAAATAAGAAGAAAAACGACAAGAGTGAGGCAAATAAATATGTCATTGGGGGTGATAAAAAAACACTTACTGATTGCAACTTCTCATTTCCCCAATCTTTTAAAGATGGTCAGATGATTCAGGCTGGTTCCAGCAAGTCCCTTTGGTCAAATAATTGTAATGCAGATGAAACAGATGACTGTATTAATGCTTTTGGGGGATCTGATGACATGCTTTCTTCATGGAGGCGGAAGAGTAGTGATTCTTCACCTGTTAAAAGTTCTAGGGATGAGGATAATGCTAATGCGGTAAGATCCACAAACTCTTCCCCTGCTACAGTCTCAAATTATGGGTATGCTGATAAAGAGCATGTCAAGCTAGAAAAGGATGAAGAGGTAGGGATAATACCTAGGGAAGATGATCTAGGTGCATCACTAGACGATGAAGAGGTTGCTGCTGTGCAAGAGCAGGTAAGGCAAATAAAGGCTCAGGAGGAGGAATTCGAAACTTTCAATCTAAAGATTGTGCACAGGAAAAACAGGCATGTCTTCAATATAACTGGCTTCGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGGCGCTATCACGTCACTGAGTATCTGGGATCTGCTGCATTTAGCAAAGCTATACAAGCTCATGACCTGCACACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAATAAGGACTTCTTTGACCAAAGCCTTGATGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGCAGACAAGTATCACATTCTGCGATTATATGATTATTTCTATTATAGAGAACATTTGTTAATAGTGTGTGAACTGCTTAAAGCCAACTTATACGAGTTCCACAAATTTAACAGAGAATCAGGGGGAGAAGTCTACTTCACAATGCCAAGATTGCAGTCAATTACCATTCAATGTTTGGAAGCACTTCAGTATTTACATAGCCTTGGACTAATACATTGTGACTTGAAGCCGGAGAATATTTTGGTTAAAAGCTATAGCAGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTCGAGACGGATCACCTTTGCTCATATGTTCAGTCCAGGTCCTATCGTGCTCCGGAGGTTATTTTGGGGCTTTCATATGACAAGAAGATTGATATCTGGTCCCTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATGTCCTCTTCCAAAATGATTCCCCTGCAACATTACTTGCTCGGGTGATTGGGATTATTGGTCCTATTGATCAAAGTATGCTTGCAAAAGGACGGGATACATATAAGTACTTCACAAAAAATCATATGCTTTATGAACGGAATCAGGAAAGCAACAGGTTAGAATACCTAATTCCAAAAAAGACATCCTTGAGGCATAGATTGCCAATGGGGGACCAAGGCTTCATCGACTTTGTTTCTCATTTGCTTGAGGTTAACCCAAAGAAGCGGCCTTCTGCAGCCGAGGCCCTGAAGCACCCATGGTTATCATACCCTTATGAGCCAATATCATCTTGA 3552 0.4122 MADTNSVEVILNFLRRNQFTRAEAALRSELSNLFDGNGFLQKPALEEKALCDISQNDKGKPVVEKQGLDSRDSVEVSKELIVKEIECGTGRNAVESKLKTVAPTEERNKSNEVVGTSDKNFTFLKSSEDGVFDLQSWKINLSNGPVQPYQNDGGSRANNTLKAPISQQSKSQMSETPNAANSNAKSGEENNVPAEKKTLWLGSSGKASMEPKCDLVQSKESRELDRQLKFNSSSLKENLADNVLSRTDENVNSSSDVWKDCSVKTVLPFSKGDMSTSYNGSTYSDKKEEKRRAEISDARAYIKEQVDEVGRAFYLGKLQSSSEQNTIGSLSFPLALEKQKEEFPRLPPVKIKSEDKPLTINWGEKFESDGMAAKLAGADSTLLIGSYLDVPIGQEIKTAGMRKATGGSWLSVSQGITEDTSDLVSGFATVGDGLSESVDYPNEYWDSDEYDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGPAKDEDDDQSFAEEDSYFSGEQYIPGKNVEPVTASDDPIGLTVTEMYGRTNGNDLMAQYDGQLMDVEELNLMHAEPVWQGFVNQTNDLIMLGDGKVLNHSGRSRLEDMEDDQHGSVRSIGVGINSDAADIGSEVHGSLIGGSSEGDLEYFRDHDGALGGSKHTHHDLDKNSINKSFQNKKKNDKSEANKYVIGGDKKTLTDCNFSFPQSFKDGQMIQAGSSKSLWSNNCNADETDDCINAFGGSDDMLSSWRRKSSDSSPVKSSRDEDNANAVRSTNSSPATVSNYGYADKEHVKLEKDEEVGIIPREDDLGASLDDEEVAAVQEQVRQIKAQEEEFETFNLKIVHRKNRHVFNITGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPADKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQYLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQSMLAKGRDTYKYFTKNHMLYERNQESNRLEYLIPKKTSLRHRLPMGDQGFIDFVSHLLEVNPKKRPSAAEALKHPWLSYPYEPISS. 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04627 1183 MobiDBLite consensus disorder prediction 766 781 - -
Seca10g04627 1183 SUPERFAMILY Protein kinase-like (PK-like) 861 1176 IPR011009 -
Seca10g04627 1183 MobiDBLite consensus disorder prediction 145 195 - -
Seca10g04627 1183 ProSiteProfiles Protein kinase domain profile. 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04627 1183 Pfam Protein kinase domain 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04627 1183 PANTHER DUAL SPECIFICITY PROTEIN KINASE 408 1174 - -
Seca10g04627 1183 MobiDBLite consensus disorder prediction 744 782 - -
Seca10g04627 1183 SMART serkin_6 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04627 1183 FunFam Putative serine/threonine-protein kinase dyrk2 866 953 - -
Seca10g04627 1183 Coils Coil 819 839 - -
Seca10g04627 1183 MobiDBLite consensus disorder prediction 650 681 - -
Seca10g04627 1183 MobiDBLite consensus disorder prediction 476 508 - -
Seca10g04627 1183 CDD PKc_DYRK_like 872 1174 - -
Seca10g04627 1183 Gene3D Phosphorylase Kinase; domain 1 866 953 - -
Seca10g04627 1183 FunFam Serine/threonine-protein kinase ppk15 951 1175 - -
Seca10g04627 1183 ProSitePatterns Serine/Threonine protein kinases active-site signature. 998 1010 IPR008271 GO:0004672|GO:0006468
Seca10g04627 1183 Gene3D Transferase(Phosphotransferase) domain 1 926 1174 - -
Seca10g04627 1183 MobiDBLite consensus disorder prediction 145 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04627 Seca-Chr10 105929304 105939232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04627 871 1169 MAP Kinase Gene Family AT5G19010 31.661 5.55e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Seca10g04627 Pkinase 2.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04627 - - mtr:25496682 2030.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g07031 12 162202398 162207292 Seca10g04627 10 105929304 105939232 PCT