Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04613 ATGTGTAGTAGAGGCCATTGGAGGCCATCTGAGGATGAGAAGCTTCGGGAGTTGGTGGAACGCTATGGACCTCATAATTGGAACGCCATAGCTGAGAAGCTAAGAGGAAGATCAGGAAAAAGTTGTAGGTTGAGATGGTTCAATCAATTGGACCCAAGAATAAACAGAAGTCCTTTCACAGAAGAAGAAGAAGAGCGTCTTCTAGCTTCTCACAGGATTCATGGTAATAGATGGGCTGTGATTGCAAGACACTTCCCTGGAAGGACTGATAACGCTGTCAAGAATCATTGGCATGTGATGATGGCAAGGATTCACCGAGAAAGGTACAAAGTTTATGCAAAAGGGTCTCCTCATCAACCAATCTTTTCTCCAAGCCCACAAGATCATCATCATCATCAGACAAACATTGAGACAACAAATCTCCCTTCTTTGGTTGACAAGTTTAGCTACCCTTGTGTCACATATAGCCCTTTCCAATTCCCCAAGAAGTTTCATTTTCAAGATCCAAGTTCTTGTTCTACAAAGTTTCAAGAGAGGAGTCAATCAGTTGAGTTTTATGATTTTCTTCAAGTAAATACTGATTCCAATAAAAGTGAAGTGACAGACAATGTAAAAAGAGACGATGAGGAAGTTAATCAAGATGCTGTGGGACAGCGGAGGAACAAGGATAACGGCGTTCCATTCATTGATTTTTTGTCTACTGGAAGCTGCTAA 714 0.4146 MCSRGHWRPSEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIHRERYKVYAKGSPHQPIFSPSPQDHHHHQTNIETTNLPSLVDKFSYPCVTYSPFQFPKKFHFQDPSSCSTKFQERSQSVEFYDFLQVNTDSNKSEVTDNVKRDDEEVNQDAVGQRRNKDNGVPFIDFLSTGSC. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04613 237 Gene3D - 57 134 - -
Seca10g04613 237 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Seca10g04613 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Seca10g04613 237 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Seca10g04613 237 Pfam Myb-like DNA-binding domain 7 67 - -
Seca10g04613 237 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Seca10g04613 237 Gene3D - 4 55 - -
Seca10g04613 237 MobiDBLite consensus disorder prediction 199 217 - -
Seca10g04613 237 PANTHER MYB PROTEIN-RELATED 4 152 - -
Seca10g04613 237 MobiDBLite consensus disorder prediction 199 222 - -
Seca10g04613 237 FunFam MYB transcription factor 4 55 - -
Seca10g04613 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Seca10g04613 237 CDD SANT 58 101 IPR001005 -
Seca10g04613 237 CDD SANT 7 48 IPR001005 -
Seca10g04613 237 SMART sant 55 103 IPR001005 -
Seca10g04613 237 SMART sant 3 52 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04613 Seca-Chr10 105131984 105135055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04613 1 236 MYB Transcription Factor Family AT1G17950 56.967 1.05e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g04613 Myb_DNA-bind_6 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04613 K09422 - gmx:100811746 372.089