Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04600 ATGTTAGCAGGTCTGGCTTTTAAAAGGAAATGGCAGACAAAAAGGAAATCAGAAGGCAAACCATATGACAAGCCCAACATAGTTACTGGGGCTAATGTGCAGTTTGAGGTTGAGCTCAAGGAAGTGAAACTCACAGAGGGATGCTATGTGATGGACCCTGTGAAAGCATTGGAATTGGTAGATGAGAACACCATACGTGTTGCAGCCATTTTGGGGTCAACTCTGACTAGAGAGTTTGAAGATGTGAAGCTTCTTAATGAACTTCTTACTAAAAAGAACAAGGAGACAGGGCGGGATACCCCAATTCATGTAGATGCTGCCAGTACCCTGGATCTAGTCAAATTATTGCTCAGTATTTCCAATTCATACGGCTTGGCTTTGAGTAAACATAAGGGTTACAAAAATATCATGGAAAATTGCTTGGAGAATGCAAGAATTCTGAAGGAAGGAATTAAGAAAACAGGGAGGTTTAACATTCTCTCCAAGGACATAGGAGTGCCACTTGTAGCCTTCTCTTTGAAAGACAGTAGCCAACACAGTGTTTGA 546 0.4158 MLAGLAFKRKWQTKRKSEGKPYDKPNIVTGANVQFEVELKEVKLTEGCYVMDPVKALELVDENTIRVAAILGSTLTREFEDVKLLNELLTKKNKETGRDTPIHVDAASTLDLVKLLLSISNSYGLALSKHKGYKNIMENCLENARILKEGIKKTGRFNILSKDIGVPLVAFSLKDSSQHSV. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04600 181 SUPERFAMILY PLP-dependent transferases 1 176 IPR015424 -
Seca10g04600 181 PANTHER GLUTAMATE DECARBOXYLASE 119 180 IPR010107 GO:0004351|GO:0006536|GO:0030170
Seca10g04600 181 Gene3D - 1 118 IPR015421 GO:0003824
Seca10g04600 181 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 108 IPR002129 GO:0016830|GO:0019752|GO:0030170
Seca10g04600 181 Pfam Pyridoxal-dependent decarboxylase conserved domain 131 174 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04600 Seca-Chr10 104864762 104867253 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04600 1 180 Calmodulin-binding Proteins AT1G65960 52.140 2.55e-71 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04600 K01580 - gmx:100796475 247.669