Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04592 ATGGCTAATTTTGAAAACGATGAGTTGCACATGCAATCAGAAACATGTGCACAACCTTATGATGAACCGTTGGATTATAATTTCAGAAGGCTTGTATCAAGGACACAAAGTACTTCAATTTCTATTCCCATGGAGTCATATGAAAGAGGAACTAGTCTTGTAGGACATACTGGTCCACTTAGGAGTGAGAGAAAAATTCCCTTTAAGCAGATGAGTGGTCCACTATATGCTACACCAGGAACTGGAAATCTTTTGCAGCAGAGTATAGTTGTAACAGGAAATGAAGCAGAGGAGAGCAAGACAGAGAGTTTTGGTACTTTCCGTGGCCCTGGTTCAATTTACTGGAAGGACAACTATGATGATAAAAATGAACATTTGATGAGGTCTGGGCGACTTGGAATGTGTAATGATCCTTATTGTACTATTTGTCCTACTTATTTCAAGGCTTCTCAGCCAGGAAATCCTAAAGCTTCCACTAAATTTGATCCCAAGGTGTTATTTCACAATGCACTTTATGGGGATGCCAAGGGTTATGTGAGAAAACTTTTTTCTTTCTGTTCTTCACATGTTCCTGGAGTTATGAATCCTCACACAAAATTCGTACAACAATGGAATAAGTTTTTGGCCATTTGTTGCTTTGTGGCAATTTTTGTGGATCCTTTATTTTTTTTCGTACTCTATGTAAAGCAGGATTATAATTGTATTGTTATTAACTGGAGATTGACAATAGGACTTACTGTAGTTAGAAGCATAAATGATCTTGTATATTTCTTTAACATTCTTCTCCAGTTTAGGTTGGCATATATTTCTCCTGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTTCATTACTTGCAGGGTTATTTTCTTTTTGACTTATTTGTTGTACTTCCTCTTCCTCAGCTCTTCATGACATACATAGTGAAATATGTGCAGATAATGATATTGGTTGTCCTACCAAATTCCTTGGAGGGAGCAAATTATGCTAAGAATGTTCTGCGTGCAGTGATCCTAGTGCAGTATATTCCCAGATTATTCAGGTTTCTGCCTCTGCTAATTGGCCAGTCTCCAACAGGATTCATATTTGAGTCAGCCTGGGCAAATTTCATTATAAATCTTCTCATTTTTGTGCTATTTGGCCATGTTGTTGGCTCTTGCTGGTACCTCTTTGGTCTTCAGAGGGTTAATCAATGTTTGCGAGATGCATGCCATAGTTCTAATATACCAGGATGTCTAAAATTCATTGATTGTGGGCGTGGCGACAATAAAAGCAATCAGACTAGTTTGGCATCAGCTCAGTGGAACAACAATACTGATGCCAATAATTGTTTGAATCCCCCTTCTAGTGGTGGTTTTCCTTATGGGATCTATGCCACTGCTGTACCACTAACTATAGAAACAAACATGGTCAACAAATATGTATATTCTCTGTTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGTAATCAAGTCCCTAGCTATTTTGTGTGGGAAGTCCTTTTTACTATGGCCACCATAGGATTGGGACTCCTGCTTTTTGCTCTTCTAATTGGAAATTTTCAGAACTTTCTTCAGTCTCTTGGACGGAGGAGGCTAGAGATGCAACTTAGACGCCGTGATGTTGAACGATGGATGAGCCATCGTCGGTTACCAGGTTACCTAAGAAGGAGAGTACGACAAGCTGAACGGTATAATTGGTCTGCAACAAGGGGAGTGAATGAAGAAATGCTTATGGAGAATTTGCCAGAAGATCTCCAGAGAGACATAAGGCGTCATCTCTTCAAATTTGTTAAGAATATTCGAATTTTTTCCCTGATGGATGAGCCTATGTTAGATGCCATTTGTGAGAGACTAAGACAAAAGACATACATCAAGGGAAGTAGAATTTTGCGTCAGGGTGGTCTGGTAGAGCATATGATCTTTGTTGTGCGTGGAAAGTTGGAGAGCATTGGAGAAAATGGAACCAGAATTCCCTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTCTGACATGGTGTCTTGAACATTGTTCAGTAAGCACAGATGGAAGAAAAGTAAGGCTTCCAGGACAAAGGTTGCTGAGCAGCAGGACAGTAACCTGCTTAACAAATGTGGAGGCATTTTCACTCCATGCTGCAGACCTTGAAGAAGTCACAATTCTTTTCACAAGATTCTTGAGGAGTCCACGTGTTCAAGGAGCACTAAGGTATGAATCACCATATTGGAGATCCCTTGCAGCAACCCGCATTCAGGTTGCATGGAGATACAAGAAGAAATGTCTAAGTCGTGCTAATTCTTCACTGTCACATATTAAACATTGA 2349 0.4006 MANFENDELHMQSETCAQPYDEPLDYNFRRLVSRTQSTSISIPMESYERGTSLVGHTGPLRSERKIPFKQMSGPLYATPGTGNLLQQSIVVTGNEAEESKTESFGTFRGPGSIYWKDNYDDKNEHLMRSGRLGMCNDPYCTICPTYFKASQPGNPKASTKFDPKVLFHNALYGDAKGYVRKLFSFCSSHVPGVMNPHTKFVQQWNKFLAICCFVAIFVDPLFFFVLYVKQDYNCIVINWRLTIGLTVVRSINDLVYFFNILLQFRLAYISPESRVVGAGDLVDHPKKIALHYLQGYFLFDLFVVLPLPQLFMTYIVKYVQIMILVVLPNSLEGANYAKNVLRAVILVQYIPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFVLFGHVVGSCWYLFGLQRVNQCLRDACHSSNIPGCLKFIDCGRGDNKSNQTSLASAQWNNNTDANNCLNPPSSGGFPYGIYATAVPLTIETNMVNKYVYSLFWGFQQISTLAGNQVPSYFVWEVLFTMATIGLGLLLFALLIGNFQNFLQSLGRRRLEMQLRRRDVERWMSHRRLPGYLRRRVRQAERYNWSATRGVNEEMLMENLPEDLQRDIRRHLFKFVKNIRIFSLMDEPMLDAICERLRQKTYIKGSRILRQGGLVEHMIFVVRGKLESIGENGTRIPLSEGDACGEELLTWCLEHCSVSTDGRKVRLPGQRLLSSRTVTCLTNVEAFSLHAADLEEVTILFTRFLRSPRVQGALRYESPYWRSLAATRIQVAWRYKKKCLSRANSSLSHIKH. 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04592 782 SUPERFAMILY cAMP-binding domain-like 539 728 IPR018490 -
Seca10g04592 782 Gene3D - 206 536 - -
Seca10g04592 782 CDD CAP_ED 611 727 IPR000595 -
Seca10g04592 782 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 164 771 - -
Seca10g04592 782 Gene3D Helix hairpin bin 538 603 - -
Seca10g04592 782 Pfam Ion transport protein 204 539 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca10g04592 782 SUPERFAMILY Voltage-gated potassium channels 196 534 - -
Seca10g04592 782 SMART cnmp_10 611 746 IPR000595 -
Seca10g04592 782 Gene3D Jelly Rolls 609 733 IPR014710 -
Seca10g04592 782 ProSiteProfiles cAMP/cGMP binding motif profile. 611 679 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04592 Seca-Chr10 104625016 104632734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04592 5 689 Ion Channels AT3G17700 57.554 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04592 K05391 - gmx:100795427 1214.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04592 10 104625016 104632734 Seca10g04592 10 104625016 104632734 ECH