Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04586 ATGGAGTACGGTAGTGGAGGAAGTGGGTCCCCTGGGGACCACCATCATCACCACCATGATGCTTCTGATTCCCAGAGAAGGAAGAAACGCTACCACCGTCACACTGCTAACCAGATTCAAAGGCTTGAATCGATGTTCAAGGAATGTCCTCACCCAGATGAGAAGCAGAGGTTACAGTTAAGTAGAGAGTTAGGCTTGGCACCTAGACAGATCAAATTTTGGTTCCAGAACAGAAGGACCCAGATGAAGGCACAGCATGAAAGAGCTGATAACTGTGCACTCAGAGCAGAGAATGACAAGATACGTTGTGAGAACATAGCCATAAGAGAAGCCCTCAAAAATGTTATCTGCCCCTCTTGTGGTGGTCCTCCTATCAATGAGGATTCTTATTTTGATGAGCAAAAATTGAGATTGGAGAATGCACATCTCAAAGAAGAGCTTGATAGAGTATCAAGCATTGCAGCTAAGTACATTGGAAGACCAATCTCTCAGCTCCCACCTGTTCAGCCTCTTCATGTGTCTTCATTGGACTTATCAATGGGGAGTTTTGGGGGACATGGTTTAGGTGGACCTTCCCTTGATCTTGATCTTCTCCCAGGGAGTTCTTCAACCATGCCAAATCTGCCTTACCAACCTGCTTGTCTTTCAGACATGGAAAAGTCTCTCATGTCTGACATTGCTTCAAATGCAATGGAAGAATTACTTAGGCTCTTGCAGACAAATGAGCCTTTATGGATGAAGTCAAGCACTGATGGAAGAGATGTTCTTAATTTTGATACCTATGATAGAATGTTCCCCAAATCTAATAGTCGCTTGAAGAATCCCAATGTTAGGATTGAGGCTTCCAGAGATTCGGGACTTGTAATCATGAATGGCTTAACTTTGGTTGACATGTTCATGGAACCAAACAAGTGGATGGAACTGTTTCCCACTATTGTCACAATGGCAAGGACTATTGAAGTTATATCTCCTGGAATAATGGGTGGTCATAGTGGAACTTTGCAATTGATGTATGAAGAGTTGCAAGTGCTTTCTCCACTTGTTCCTACTAGAGAATTCTACTACCTGCGTTATTGTCAGCAAATTGAACAAGGCTTGTGGGCAATAGTTGATGTTTCATATGATTTTCCTCATGATAACCAATTTGATCCTCCATTCCGGTCACATCGTCTACCTTCTGGTTGTTTTATCCAAGACATGCCTAATGGATATTCCAAGGTTACTTGGATTGAACATGTAGAAATTGAAGATAAAACTCCAGTTCATAGGCTATATAGAAATGTTATCTATAATGGGATGGCATTTGGAGCACAAAGATGGCTTTCTACTCTTGAGAGGATGTGTGAAAGGCTTGCATGTCTAATGGTGACAGGCAATTCTACTCGTGATCTTGGAGGAGTGATTCCATCTCCTGAGGGAAAGAGGAGCATGATGAAACTAGCACAAAGGATGGTGACAAATTTCTGTGCAAGCATTAGTGCATCAGCTAGTCACAGATGGACCACACTCTCAGGGTTGAATGAAATTGGAGTCAGAGTCACTGTGAGGAAGAGCACAGACCCTGGCCAACCTAATGGTGTGGTACTAAGTGCAGCCACTACCATTTGGCTCCCAATCCCTCCACAAACTGTGTTCAATTTCCTAAAAGATGAAAGAAAAAGATCTCAGGTTTGTGATATGGTTAACTCTTTTCAAAAGCCTTTGTTTTTATAA 1713 0.4244 MEYGSGGSGSPGDHHHHHHDASDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPPINEDSYFDEQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPLHVSSLDLSMGSFGGHGLGGPSLDLDLLPGSSSTMPNLPYQPACLSDMEKSLMSDIASNAMEELLRLLQTNEPLWMKSSTDGRDVLNFDTYDRMFPKSNSRLKNPNVRIEASRDSGLVIMNGLTLVDMFMEPNKWMELFPTIVTMARTIEVISPGIMGGHSGTLQLMYEELQVLSPLVPTREFYYLRYCQQIEQGLWAIVDVSYDFPHDNQFDPPFRSHRLPSGCFIQDMPNGYSKVTWIEHVEIEDKTPVHRLYRNVIYNGMAFGAQRWLSTLERMCERLACLMVTGNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISASASHRWTTLSGLNEIGVRVTVRKSTDPGQPNGVVLSAATTIWLPIPPQTVFNFLKDERKRSQVCDMVNSFQKPLFL. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04586 570 SUPERFAMILY Bet v1-like 217 451 - -
Seca10g04586 570 SMART HOX_1 26 89 IPR001356 GO:0003677
Seca10g04586 570 MobiDBLite consensus disorder prediction 21 35 - -
Seca10g04586 570 FunFam Homeobox-leucine zipper protein GLABRA 2 225 449 - -
Seca10g04586 570 CDD homeodomain 28 86 IPR001356 GO:0003677
Seca10g04586 570 Gene3D - 13 99 - -
Seca10g04586 570 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 556 IPR042160 -
Seca10g04586 570 CDD START_ArGLABRA2_like 220 449 - -
Seca10g04586 570 ProSiteProfiles START domain profile. 216 453 IPR002913 GO:0008289
Seca10g04586 570 SUPERFAMILY Homeodomain-like 5 85 IPR009057 -
Seca10g04586 570 Pfam START domain 226 450 IPR002913 GO:0008289
Seca10g04586 570 Gene3D - 223 451 IPR023393 -
Seca10g04586 570 SMART START_1 225 450 IPR002913 GO:0008289
Seca10g04586 570 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981|GO:0006355
Seca10g04586 570 SUPERFAMILY Bet v1-like 471 563 - -
Seca10g04586 570 Pfam Homeodomain 28 83 IPR001356 GO:0003677
Seca10g04586 570 FunFam Homeobox-leucine zipper protein HDG1 15 101 - -
Seca10g04586 570 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677
Seca10g04586 570 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04586 Seca-Chr10 104478190 104483114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04586 23 556 Homeobox Transcription Factor Family AT1G73360 66.728 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca10g04586 START 6.4e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04586 K09338 - gmx:100809075 959.518