Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04585 ATGATCTCTTCTCATGTCACCCATGGCAAAAGTAAAGAAGTTGTTGAACTCTACGACAACATGCTTGTGGAGGGTGTTTTACCTGATGCCTACACATTCTATGCTATCTTCAAGGCCTTTTCAGAGTTGGGTCTCCTGAGCCATGGCCACAAGGCTCATGGGTTGGCTGTGGTTTTGGGTTTGAAGGTCAAGGATGGGTTTGTTGCTAGTGCCCTTGTTAATATGTATGCCAAGTTTGATAAAATGAAGGATGTCCATTTGGTGTTTGATCGTGTTTTGGAAAAAGATGTATTGTTCACTGAATTGATTGTGGGTTATGCTCAACATGGTCTTCATGGGGAAGCTTTAGAGTTTTTTGAGGACATGGTTGATAGGAGAATCAAGCCTAATGAGCATACTCTTGCAAGCATCTTGATTAGTTGTGGTAATCTAGGTGATTTAGTTAATGGTCAGTTGATTCACTGTCTTGTTGATTCTGGTCTTAGAGCAGTCATGTGTATGGGAGTAATTGCTGGTGTTGGCTTGGTGGTTCATTATATTTGTGGCCAACCTGGCCCTGCTGCTATTGTCATTAGGAATGACCTGGCATTATCATCTACTGCTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAGAGCACATCACGGAATGGAAAAGCTACATTTTCTATTTTACCTTTTCAGGATTTGGCTGTTGTGGTCTTATTAATCCTCATACCCCCAATTTCACCTAGTTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCAAAGCAATAGCTGATTTTGGAGTTGTTTTTCTTTTCTTCAATATTGGCATGAAGCTCTCTGTTGAAAGGCTTAGTTCAATGAAGCTCTCTTCTTTTATTGGTCGTGCCTCTGCCAGAAATAAGGGTCGAATGGCTCGCTATCTTGCAAACAAATGTTCAATTGTATCACAGATTGACTGCTTTTTTGAAAGGGGTTCTACTGCATTTGGGGAGAAGCTTCGTGAGCAAGTTGAGGAGCGACTTGACTATTATGACAAGGGAGTTGCCCCTCAGAAGAACATAGATGTCATGAAGTCTGCTATTGAAAGTGTTGTAAACAAAGATACAGAGATGGAAACAGAAGAAGTGCCTCTTGAAGTTTCAGTCAAGAAAGGCAAGAAGAAGAAGCATAAAGTTGTTGCTGATGTGGCTGTTGGATTTGGTTTCAAGTTTTATGAAGATCCCTTTTCTTTTGTTGTGTTCCTCTTTTGGTTTCAAGTTGATATTGGTTGA 1257 0.4121 MISSHVTHGKSKEVVELYDNMLVEGVLPDAYTFYAIFKAFSELGLLSHGHKAHGLAVVLGLKVKDGFVASALVNMYAKFDKMKDVHLVFDRVLEKDVLFTELIVGYAQHGLHGEALEFFEDMVDRRIKPNEHTLASILISCGNLGDLVNGQLIHCLVDSGLRAVMCMGVIAGVGLVVHYICGQPGPAAIVIRNDLALSSTAVVLQVLQERGESTSRNGKATFSILPFQDLAVVVLLILIPPISPSSSKGGVGFQAKAIADFGVVFLFFNIGMKLSVERLSSMKLSSFIGRASARNKGRMARYLANKCSIVSQIDCFFERGSTAFGEKLREQVEERLDYYDKGVAPQKNIDVMKSAIESVVNKDTEMETEEVPLEVSVKKGKKKKHKVVADVAVGFGFKFYEDPFSFVVFLFWFQVDIG. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04585 418 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 255 287 - -
Seca10g04585 418 Gene3D - 152 256 IPR038770 -
Seca10g04585 418 SUPERFAMILY Nop domain 270 340 IPR036070 -
Seca10g04585 418 ProSiteProfiles Nop domain profile. 190 341 IPR002687 -
Seca10g04585 418 Pfam snoRNA binding domain, fibrillarin 284 337 IPR002687 -
Seca10g04585 418 Pfam PPR repeat family 1 40 IPR002885 -
Seca10g04585 418 Pfam PPR repeat family 97 138 IPR002885 -
Seca10g04585 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Seca10g04585 418 Gene3D Nop domain 262 339 IPR042239 -
Seca10g04585 418 Gene3D Tetratricopeptide repeat domain 51 151 IPR011990 GO:0005515
Seca10g04585 418 Gene3D Tetratricopeptide repeat domain 1 50 IPR011990 GO:0005515
Seca10g04585 418 NCBIfam pentatricopeptide repeat 98 131 IPR002885 -
Seca10g04585 418 NCBIfam pentatricopeptide repeat 1 30 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04585 Seca-Chr10 104467103 104468359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04585 256 283 Inorganic Solute Cotransporters AT4G00630 85.714 1.30e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04585 - - gmx:100798964 253.832