Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04584 ATGGAGATGAAGGACCAAGTAGAAGGCACAAGTTCAACCATATTTGGCAAAGCTAGTAACTGCCCTTCCAATGGTGGAACACAATCTGAAAATGTTGCAAAATTGCTTGGAAACAGCCATACCCCCAAGGTTAGGAAACCATATACCATTACTAAACAAAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTATGGTCGAGGCTGGCGTCAAATTGAAGAGCATATAGGTACCAAAACTGCAGTTCAGATTCGAAGCCATGCTCAGAAATTTTTCTCTAAGGTTGTGAGGGAATCTGATGGCAGTGCTGAAAGTTCTATTCATCCAATTGACATACCTCCTCCTCGGCCTAAGAGGAAACCCCTTCACCCATATCCCCGTAAATCAATTGACTCTTTCAAAGCACAGTCCATCCCAAATGAACCAGAAATATCTCCATCTACAAACCTGTCAGTTACAGAGAAAGACACCCCATCTCCAACCTCTGTGCTATCTTCATTTGGTTCAGAACCATTTGGCTCAGCATTTTCTGAGCAGACTAACAGATGCCTTTCACCAAATTCTTGCACCACTGATATTCACTCAGCCAGCTTGTCACCTGTTGAAAAGGAAAATGATTGCATGACATCCAAACCTTCTGAGGAGGAAGAGAAAGGATCTTTAGCTTCAGTCCCTTTATCCACTGTTTCAAACGTACTCATGAGCATGAAGTCCGAGATTAGTTCCAAGGAAACTGAATCTTCAAAAGAAGATGCTGCCAATATGCCACACACTACTAGTATTAAGCTTTTTGGAAGAACAGTTTCTATGTTAGGTTATCAGAAGTCAATGAACGTGGATGAGAATGTTAAGCCAAAAACTATCAAGTCTGATGAAGTGGATGATGTTGAGAATGAAATGGTTGGCCAAGCAGGGGTATCCGAGAATCTGGATATACAGTTATCACTGGGAATGTGTAGTGATAACTGGCATATAACACCTGATGGAGCTAAAGTAACCAACATAGAACACCCAAAGGAGAATCTATGCTTCAGTGAATGTGCACCTGATGCATCTTTGCCATTGTGGAGTCTGTACCAAGGCCTTCCAGGTTTTTACCTTAGGCCATGTAACCATCAGATCCTAAATCCTATGCCCCTTAGGCCCTCCTTGAAGGTAAAAACAAGAGAGGAGGAAAGTTCTTGCACTGGTTCTAACACTGAATCAGTTTGTGATATGGAAAATCAAGGCAAGAACTCAGATGCTGTTGATTCTCAATGTCAAAAGTATCATGAGGAAAGAGTAGCACCCCAAAAGTCTGGTAGGGGGTTTGTACCATATAAAAGATGTTTAGCTGAAAGAGATGCAAATTCTTTAATTGTTGCCTTGGAAGAGAGGGAGGGACAACGAGCACGGGTGTGCTCATAG 1428 0.4216 MEMKDQVEGTSSTIFGKASNCPSNGGTQSENVAKLLGNSHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESDGSAESSIHPIDIPPPRPKRKPLHPYPRKSIDSFKAQSIPNEPEISPSTNLSVTEKDTPSPTSVLSSFGSEPFGSAFSEQTNRCLSPNSCTTDIHSASLSPVEKENDCMTSKPSEEEEKGSLASVPLSTVSNVLMSMKSEISSKETESSKEDAANMPHTTSIKLFGRTVSMLGYQKSMNVDENVKPKTIKSDEVDDVENEMVGQAGVSENLDIQLSLGMCSDNWHITPDGAKVTNIEHPKENLCFSECAPDASLPLWSLYQGLPGFYLRPCNHQILNPMPLRPSLKVKTREEESSCTGSNTESVCDMENQGKNSDAVDSQCQKYHEERVAPQKSGRGFVPYKRCLAERDANSLIVALEEREGQRARVCS. 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04584 475 PANTHER SWI/SNF COMPLEX-RELATED 23 425 - -
Seca10g04584 475 ProSiteProfiles SANT domain profile. 52 103 IPR017884 -
Seca10g04584 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
Seca10g04584 475 MobiDBLite consensus disorder prediction 397 417 - -
Seca10g04584 475 MobiDBLite consensus disorder prediction 402 417 - -
Seca10g04584 475 CDD SANT 56 99 IPR001005 -
Seca10g04584 475 MobiDBLite consensus disorder prediction 140 173 - -
Seca10g04584 475 MobiDBLite consensus disorder prediction 245 264 - -
Seca10g04584 475 NCBIfam myb-like DNA-binding domain, SHAQKYF class 52 101 IPR006447 GO:0003677
Seca10g04584 475 MobiDBLite consensus disorder prediction 109 173 - -
Seca10g04584 475 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Seca10g04584 475 MobiDBLite consensus disorder prediction 1 36 - -
Seca10g04584 475 MobiDBLite consensus disorder prediction 201 230 - -
Seca10g04584 475 SMART sant 53 101 IPR001005 -
Seca10g04584 475 Pfam Myb-like DNA-binding domain 54 97 IPR001005 -
Seca10g04584 475 MobiDBLite consensus disorder prediction 1 48 - -
Seca10g04584 475 Gene3D - 56 103 - -
Seca10g04584 475 FunFam protein REVEILLE 6 isoform X1 56 104 - -
Seca10g04584 475 SUPERFAMILY Homeodomain-like 48 102 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04584 Seca-Chr10 104394762 104399485 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca10g04584 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04584 - - gmx:778089 719.539