Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04583 ATGAGTGCTATGGCTAACGTTGTTGGCGTTGGGGTAGCTGCTCTTCCTCTTCCTCCATTACCCATAACAAAGTCAAGTGCTTTCACTTTCAGCCATAGGACGAAGGGTCAAAGCCAGAGACTTCATCTGAATTGCTCTCAAACCAACCACAGAACAACCCCATTCTCTTTTACCTTATCATCATCGCTCAGAAACAAAGGTAGTTGCTCTGTGTTGCCGTGTCTTCCTCCTGCTTCTGAATCCTCAAGCTCATCTCCCAACAATAGACCCTCCTCTGCTGCTTCTTCAACTAAGCTCTATGTCAGTGGGCTATCATTTCGTACCACTGAAGAGAGTTTGCGGAATGCATTTAAAAATTTTGGTCAACTTGTAGAAGTCAATCTGGTGATGGATAAAATTGCAAATAGACCAAGGGGTTTTGCTTTTCTTCGTTATGCAACTGAAGAGGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGAAGGGTCATATTTGTGGAAGTTGCCAAACCGAGATCAGAGCTAAGGCCAAGACACAAGCAAAACACTATGCAGTAA 570 0.4386 MSAMANVVGVGVAALPLPPLPITKSSAFTFSHRTKGQSQRLHLNCSQTNHRTTPFSFTLSSSLRNKGSCSVLPCLPPASESSSSSPNNRPSSAASSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVNLVMDKIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRPRHKQNTMQ. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04583 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Seca10g04583 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 168 IPR000504 GO:0003723
Seca10g04583 189 SUPERFAMILY RNA-binding domain, RBD 86 184 IPR035979 GO:0003676
Seca10g04583 189 Gene3D - 75 187 IPR012677 -
Seca10g04583 189 PANTHER NUCLEOLAR PROTEIN 8 81 181 - -
Seca10g04583 189 SMART rrm1_1 98 171 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04583 Seca-Chr10 104391413 104395332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04583 97 186 Eukaryotic Initiation Factors Gene Family AT4G34110 30.851 4.50e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04583 - K13195 gmx:100305561 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04583 10 104391413 104395332 Seca10g04583 10 104391413 104395332 ECH