Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04573 ATGGTCAGAAAAAGGAGAACTGAAGGACCTAGCGGAGGTGACAGCTCTGAGGCTCAACGCCCAGCTGAAAGGAGTGCTCCACCTCCACAACAGGCTGCTGCGGCAGGAGGCGCAGGACCCCAAGGAGGTAGAGGTTGGGCCCCTCAAGGTGGACGTGGGGGATATGGTGGGGGGCGTGGTCGTGGACCGCCTCAGCAGCAGTATGGTGGCACCCCTGACTATCAAGGTAGGGGGAGGGGAGGGCCTTCCCAGCAAGGGGGTCGTGGAGGATATGGTGGTGGCCGTGGTGGCGGTGGTGGGGTGGGCAGTGGCCGTGGCGTAGGTCCTTCGTATGGTGGCCCATCTAGGCCACCAGCACCCGAGCTGCACCAAGCAACCTCAGTCCCACATCAAGCTGTGGTGACTCCTCAGCCTGTATCATCTGAGGCCAGTTCATCGTCCCAGCTGCCAGAAATGTCCGAAGCAGAACAGCAAATGGGACAGATGACACTTTATCCTGAAGCTACTCCCACCCCTCCTCCCTCAAGTAAATCCTCAATGAGGTTTCCACTTCGCCCTGGAAAGGGTAGCTATGGCACTAAATGTATAGTTAAGGCCAACCATTTCTTTGCTGAGTTACCTAATAAAGATCTGCACCAGTATGATGTAACAATTACTCCAGAAGTGACTTCAAGAGGTGTGAACCGGGCTGTTATGGAGCAACTGGTGAGGCTGTACCGTGAATCTCATCTGGGAAAGAGGCTTCCTGCTTATGATGGCCGTAAGAGCCTCTATACAGCAGGGCCTCTTCCTTTTATGTCAAAGGAGTTTAGAATCACCCTCACTGATGATGATGATGGAGCAGGCCAGAGGAGGGACAGGGAATTTAAAGTTGTGATAAAATTGGCTGCACGAGCAGACCTTCATCACTTGGGACTGTTCCTGCAGGGGAGGCAAACTGACGCACCTCAGGAAGCTCTCCAGGTTCTTGACATTGTTCTGCGTGAACTACCTACTACCAGGTATTGTCCTGTGGGAAGATCATTTTATTCACCTGATCTTGGTAGAAGGCAGCCCTTAGGTGAGGGGTTGGAAAGTTGGCGAGGATTCTATCAAAGCATTCGTCCTACTCAAATGGGACTGTCTCTGAACATTGATATGTCCTCAACTGCATTTATTGAGCCATTGCCAGTAATTGACTTCGTAACTCAATTGCTGAACAGGGATGTCTCCACCCGTCCACTTTCTGATGCTGATCGTGTCAAGATCAAAAAAGCTCTCCGTGGTATCAAAGTTGAAGTAACACATCGCGGAAATATGAGAAGAAAATATCGTATCTCTGGCCTGACTTCGCAGGCTACTAGAGAGTTGACATTCCCTGTGGATGAGAGGGGAACAATGAAGTCTGTTGTTGAGTATTTCTATGAGACATATGGTTTTGTAATTCAACATACTCAGTGGCCTTGTTTGCAAGTGGGCAATACACAGAGACCAAACTATCTGCCAATGGAGGTTTGCAAGATAGTAGAAGGTCAACGGTACTCAAAGCGGTTGAATGAGAGGCAGATCACTGCTTTGCTAAAAGTGACATGCCAGCGGCCTGTTGAGAGGGAGCGAGATATCATGCAGACAGTACATCACAATGCGTATCATGAAGATCCTTATGCTAAAGAGTTTGGAATCAAAATCAGTGAGAAGCTTGCTCAAGTTGAAGCCCGCATCCTTCCTCCACCTTGGCTCAAATATCATGACACGGGTAGAGAAAAGGATTGTCTCCCTCAAGTTGGCCAATGGAATATGATGAACAAGAAAATGGTCAATGGGGGAACAGTCAACCACTGGTTCTGCATAAACTTCTCAAGAAATGTTCAAGATAGTGTTGCCCGTGGCTTTTGTTATGAACTTGCCCAGATGTGTTATATATCTGGCATGGCATTTAATCCAGAGCCAGTAGTCCCCCCACTTAGTGCTCGTCCTGACCAAGTTGAAAAGGTTCTTAAAACAAGGTATCATGATGCAAAGAACAAACTGCAGGGAAGGGATCTCGATCTGCTCATTGTTATTTTGCCTGATAATAATGGCTCTCTTTATGGTGACCTCAAACGTATTTGTGAGACTGATCTTGGTCTTGTTTCCCAATGTTGTTTAACTAAACATGTCTTCAAAATGAGCAAGCAGTACCTTGCAAATGTTGCCTTGAAAATTAACGTGAAGGTGGGAGGAAGGAACACTGTGCTTGTTGATGCTATTTCACGGCGCATTCCCTTAGTCAGTGACAGGCCTACAATTATTTTTGGAGCTGATGTTACTCATCCACATCCAGGAGAGGATTCAAGTCCATCAATAGCTGCTGTTGTGGCTTCTCAAGATTGGCCTGAAATTACAAAGTATGCTGGTTTGGTTTGTGCTCAAGCACATCGACAGGAGCTCATTCAAGATCTTTTCAAACAATGGACAGATCCTGTCAGAGGAACATTAACTGGTGGAATGATCAAGGAACTTCTTATATCTTTCCGGCGGGCTACAGGACAAAAGCCCCAGCGTATCATATTTTACAGGGATGGTGTAAGTGAGGGGCAGTTTTATCAAGTTTTATTGTTTGAGCTTGATGCTATCCGAAAGGCTTGTGCATCACTTGAACCCAACTATCAGCCTCCTGTGACTTTTGTGGTGGTTCAAAAGCGTCATCACACTAGGCTCTTTGCCAGTAACCATCATGACAAGAGTTCCGTGGACCGTAGTGGCAATATATTGCCTGGCACAGTTGTAGACTCTAAAATCTGCCACCCAACTGAATTTGATTTTTATCTTTGTAGTCATGCTGGAATACAGGGTACAAGCCGGCCAGCACATTATCATGTGTTGTGGGACGAAAACAATTTTACTGCTGATGCTTTACAAACACTTACGAACAACCTGTGTTACACATATGCTAGATGCACACGCTCTGTTTCAATTGTTCCACCTGCATATTATGCCCATTTGGCTGCATTCCGAGCTCGGTTTTATATGGAACCTGAGACTTCAGATAGTGGGTCTATGACAAGTGGTGCTGCTGCTGGTCGTGGAATGGGTGGTGGTGCAGGACGAAGTACTCGTGCACCTGGTGCTAGTGCTGCTGTGAGACCCCTTCCTGCACTCAAGGAGAATGTGAAGAGGGTTATGTTTTACTGCTAA 3156 0.4728 MVRKRRTEGPSGGDSSEAQRPAERSAPPPQQAAAAGGAGPQGGRGWAPQGGRGGYGGGRGRGPPQQQYGGTPDYQGRGRGGPSQQGGRGGYGGGRGGGGGVGSGRGVGPSYGGPSRPPAPELHQATSVPHQAVVTPQPVSSEASSSSQLPEMSEAEQQMGQMTLYPEATPTPPPSSKSSMRFPLRPGKGSYGTKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFMSKEFRITLTDDDDGAGQRRDREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSTRPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVHHNAYHEDPYAKEFGIKISEKLAQVEARILPPPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWFCINFSRNVQDSVARGFCYELAQMCYISGMAFNPEPVVPPLSARPDQVEKVLKTRYHDAKNKLQGRDLDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWTDPVRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAAAGRGMGGGAGRSTRAPGASAAVRPLPALKENVKRVMFYC. 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04573 1051 Pfam Mid domain of argonaute 586 661 IPR032473 -
Seca10g04573 1051 MobiDBLite consensus disorder prediction 128 158 - -
Seca10g04573 1051 Pfam Glycine-rich region of argonaut 69 171 IPR024357 -
Seca10g04573 1051 CDD Piwi_ago-like 547 997 IPR045246 -
Seca10g04573 1051 ProSiteProfiles PAZ domain profile. 389 503 IPR003100 GO:0005515
Seca10g04573 1051 Pfam Piwi domain 678 997 IPR003165 GO:0003676
Seca10g04573 1051 Pfam Argonaute linker 1 domain 337 387 IPR014811 -
Seca10g04573 1051 SMART PAZ_2_a_3 393 525 IPR003100 GO:0005515
Seca10g04573 1051 SMART DUF1785_2 336 388 IPR014811 -
Seca10g04573 1051 Pfam N-terminal domain of argonaute 194 327 IPR032474 -
Seca10g04573 1051 FunFam Argonaute 10 567 740 - -
Seca10g04573 1051 Pfam PAZ domain 393 518 IPR003100 GO:0005515
Seca10g04573 1051 CDD PAZ_argonaute_like 388 502 - -
Seca10g04573 1051 FunFam protein argonaute 10-like 746 1051 - -
Seca10g04573 1051 SUPERFAMILY Ribonuclease H-like 663 998 IPR012337 -
Seca10g04573 1051 Gene3D - 746 1051 IPR036397 GO:0003676
Seca10g04573 1051 FunFam Protein argonaute-2 382 508 - -
Seca10g04573 1051 Gene3D paz domain 382 507 - -
Seca10g04573 1051 SUPERFAMILY PAZ domain 196 540 IPR036085 GO:0005515
Seca10g04573 1051 MobiDBLite consensus disorder prediction 1006 1030 - -
Seca10g04573 1051 SMART Piwi_a_2 677 998 IPR003165 GO:0003676
Seca10g04573 1051 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 171 999 - -
Seca10g04573 1051 MobiDBLite consensus disorder prediction 164 183 - -
Seca10g04573 1051 Gene3D - 567 740 - -
Seca10g04573 1051 ProSiteProfiles Piwi domain profile. 677 998 IPR003165 GO:0003676
Seca10g04573 1051 Pfam Argonaute linker 2 domain 529 575 IPR032472 -
Seca10g04573 1051 MobiDBLite consensus disorder prediction 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04573 Seca-Chr10 104154411 104161622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04573 73 1051 Eukaryotic Initiation Factors Gene Family AT1G48410 81.744 0.0 1622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04573 K11593 - gmx:100780375 1768.44