Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04552 ATGTCTCGCAGAATAATATCATTATCTGAGATTGTGAGTGGTAGAGTAGATTGGAAAATTAGGGTGAAAGTAATTAGATTATGGAACGGAACAGATTTTGAAGATCCAAGTATTAAAAACAGTATTGAGATGGTTTTTCTTGATGAAAAGGTGGGTTTCATGTTGTTTAATCATTTTCATTTTTTAACATGTCAGGTTAATTGTCCTCTGTTTTTTCAGGGTACTCGGATGCACTGTATTATTAAAAAAGCTTTAATGGCTACTTTTGAGAATGAATTCAAAGAAGGGTCGTGTTATCTTATCCAGAATATTATGGTTGCTCATAATGAGGGAAGATTTAAGACTACTTCTCATAAGTTCAAATTGAGTTTTATGGCAAATACAAGGGTTCAACAGATAAATTGTGAAAGTTTTCCTATAAATGCTTATCAATTTGTTCATTTCGATCATATTAATGATGGGCGTCCTACCAACTTATTAATGGATGTTATAGGTCATATTGTGCAGAAAGATGAGATTAAAGTGAATTCAAAGAATAACAACACAACAAAGCGCATAGAATTGGTTTTGGAAGATTTAGAGAAAAATCAGATGAGTTGTACTTTGTGGAATCACTATGCTGAAGATTTGGAAGAGTATATGAGTAAATAA 651 0.318 MSRRIISLSEIVSGRVDWKIRVKVIRLWNGTDFEDPSIKNSIEMVFLDEKVGFMLFNHFHFLTCQVNCPLFFQGTRMHCIIKKALMATFENEFKEGSCYLIQNIMVAHNEGRFKTTSHKFKLSFMANTRVQQINCESFPINAYQFVHFDHINDGRPTNLLMDVIGHIVQKDEIKVNSKNNNTTKRIELVLEDLEKNQMSCTLWNHYAEDLEEYMSK. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04552 216 CDD RPA1_DBD_A_like 19 130 - -
Seca10g04552 216 Pfam Domain of unknown function DUF223 73 152 IPR003871 -
Seca10g04552 216 SUPERFAMILY Nucleic acid-binding proteins 143 210 IPR012340 -
Seca10g04552 216 Gene3D - 2 133 IPR012340 -
Seca10g04552 216 Gene3D - 137 216 IPR012340 -
Seca10g04552 216 SUPERFAMILY Nucleic acid-binding proteins 5 132 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04552 Seca-Chr10 103833776 103835358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04552 73 207 Core DNA Replication Machinery Family AT5G08020 25.000 3.16e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04552 - - mtr:112422829 141.354