Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04543 ATGGCTCTGTCAGAACCATCCTCCTCTTCCTTTGCCAATGATTTCACCTACGATGTATTCCTCAGCTTTAGAGGCTCTGATACACGCCACCATTTCACTGGCAATCTCTGGAAAGCCCTTTGTGACAAGGGAATCTGCACATTCTTTGATGATAAGGAGCTTCGAAAAGGGGAAGAAATAACACCAGCACTTGAGAAGGCAATTGAAAATTCCAGGATTGCCATCATTGTTCTATCTGAGGACTATGCATCTTCTTCATTTTGCTTAGATGAGCTTTCCAAGATCCTTGACTGCATTAAGGGAAAGGGCCGGTTAGTTTGGCCGGTCTTTTATAAGGTGGATCCTTCTGATGTGCGAAAGCAAACAGGGACTTACGAAGAAGCAATGGCTATGCAGGAGAAAAGGTTCAAAGATAACATGGATAGGTTGCAAAAATGGAAGAATGCTTTGCAACAAGTTGCTAACTTAGTTGGCTCTCATTTCATACTTAGGAATGAATATGAACATGAATTTATTTGGAAGATAGTTAAAGAGGTTTCCAACAAGATTAATTGCCAACCTTTACATGTTGCAAGTTACCCCGTTGGACTAGAACCTCAAGTACAACAAGTTCTCTCGCTTCTAGATGTTGCATCCGATAATGTGGTGCACATGGTAGGGATCTATGGAATTGGTGGAATGGGTAAAACAACACTTGCTCGTGCAGTTTATAATTATATTGCTGACATATTTGAAGGTCTGTGTTTTCTTAATGATGTGAGCAAACATGGATTAGTAGATCTCCAAAAGACACTTCTTTCTGAAATAGTTGGAGAGAAGGATATTCAGATAGGGAGTTTCAGTGAAGGGATTCCAATAATAAAGCATAGGCTCAAGAGAAAGAAGATTCTTTTAATTCTTGATGATGTTGACAATATAAAACAGCTACGGGCAATTGCTGGAAAGCTTACTTGGTTTGGTCCCGGTAGCAGAGTCATCATAACAACCCGAGACAAACATTTGCTAACAACTCATGGGATTGAAGAAAAATATGAGGTAGATGGATTGAACGAGAAAGAAGCGTGTGAGTTGCTTAGTTGGAATGCTTTTAAAAATGATAAATTTGATCCAAGTTATAAGAATGTTATAAACCAAGTAGTAGCTTATGCTTTTGGCCTCCCACTAGCTTTGGAAGTAATAGGTTGCAACTTATTTGGAAGAGATAATAAAAAATGGGAATCTGCATTACATTCATATAAAAAGATTCCTATTAAAGAGATTCAAGAAGTACTTAAAGTGAGCTTTGATGGTTTGGAGGAGGAAGAGCAAAGTGTTTTTCTCGACATTGCTTGTTGTTTAAGAGGATATAGATTGGCAGAGGTCAAAGAAATACTTCATGCTAATCATGGTAGTGACAAGGAATATCAAATTGAAGTGTTGATTGACAAATCTCTCATAAAGATTACTGACTTCGATGAGGTGACACTACATGACCTGATTGAGGACATGGGTAAAAAAATTGTCTGTCAAAAATTACCAAAAGAGCCCGGAAAACGCACTAGGTTATGGGATCATAAAGATATAGTTAAAGTTTTAAAAGAAAATAAGAAGTTCATGAATATGAAAGTTTTAAATTTGGACTCCTGTGATTTTTTAACAGAGATATGTGACATGTCTAATCTCCCAAATTTAAAAGAACTTTCATTTAAATATTGTATGAATCTAATTACAATTCACGAGTCGGTTGGGTACTTGGAGAAACTTGAAATTTTGAATGCTAGTGGCTGCCACAAGCTGAGTTTTCCACCCTTGAAGTTGCCCTTTCTTAAAGATTTTGATTTTTCTTATTGTGAAAGTCTTGAGAGTTTTCCAGAAATAATAGGAAAGATGGAAAAGATAACAAAGCTTAGGTTTCAGGGCATTAACATAAAAGAATTGCCGCTTTCATTTCAAAATCTTACTCGGCTTGAGAAATTAGATATGTCATTTTGCAAAATGTTTCAGTCAGGAAGTACCAAAGAGTGGCTATTCCCTAAACAGGACGAGGGTGAAGAAAATGTGATCTCAATGTCGTTATCAAAGGAACTACATGAGCCTGGAAACACCTACTTTATTTTGCCGGGAAGAGCAAGCATTCCAGAGTGGTTCGAGCACCAGAGCAGGGGACAATCAACTTCTTTCTGGTTTCGTAACAAGTTTCCTGACATAGTGCTTTGTCTTGTTTATCCTGATCCACCGATATATTTTACTATAACCGTGATCATCAACAACAAAAAATTTATGTATTTTGATATGGACGATGTATGGTTTCCATCGCCATCAGGAGGTGATACACATCTTCTTCATTTGCTGAGGGATAGGTTCATTCCTAATCTGGACATAGAACTTTCAGAAAATTTCAATGAAGCACTTTTAGAAAATCAGTGGAACCATGCAAAGGTTACAATAGAGGGTCACAAAGCTAGATTTGGAGACGGAGAGAAAGATGAAGTTGTATTGGAAGCGCTAAATAACGTAGATATTGGAATTCATATATTGAAAGAGAAAAGTGTCATGGAGGATATTCGATTCACCAATCCTTATGAAAAACCACAATTTCTTGAGAATGATGTTGATGATCTTACTACCTCACTCTCTAAAATACAGCTCTGA 2631 0.3725 MALSEPSSSSFANDFTYDVFLSFRGSDTRHHFTGNLWKALCDKGICTFFDDKELRKGEEITPALEKAIENSRIAIIVLSEDYASSSFCLDELSKILDCIKGKGRLVWPVFYKVDPSDVRKQTGTYEEAMAMQEKRFKDNMDRLQKWKNALQQVANLVGSHFILRNEYEHEFIWKIVKEVSNKINCQPLHVASYPVGLEPQVQQVLSLLDVASDNVVHMVGIYGIGGMGKTTLARAVYNYIADIFEGLCFLNDVSKHGLVDLQKTLLSEIVGEKDIQIGSFSEGIPIIKHRLKRKKILLILDDVDNIKQLRAIAGKLTWFGPGSRVIITTRDKHLLTTHGIEEKYEVDGLNEKEACELLSWNAFKNDKFDPSYKNVINQVVAYAFGLPLALEVIGCNLFGRDNKKWESALHSYKKIPIKEIQEVLKVSFDGLEEEEQSVFLDIACCLRGYRLAEVKEILHANHGSDKEYQIEVLIDKSLIKITDFDEVTLHDLIEDMGKKIVCQKLPKEPGKRTRLWDHKDIVKVLKENKKFMNMKVLNLDSCDFLTEICDMSNLPNLKELSFKYCMNLITIHESVGYLEKLEILNASGCHKLSFPPLKLPFLKDFDFSYCESLESFPEIIGKMEKITKLRFQGINIKELPLSFQNLTRLEKLDMSFCKMFQSGSTKEWLFPKQDEGEENVISMSLSKELHEPGNTYFILPGRASIPEWFEHQSRGQSTSFWFRNKFPDIVLCLVYPDPPIYFTITVIINNKKFMYFDMDDVWFPSPSGGDTHLLHLLRDRFIPNLDIELSENFNEALLENQWNHAKVTIEGHKARFGDGEKDEVVLEALNNVDIGIHILKEKSVMEDIRFTNPYEKPQFLENDVDDLTTSLSKIQL. 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04543 876 Gene3D - 16 181 IPR035897 -
Seca10g04543 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 442 IPR027417 -
Seca10g04543 876 SUPERFAMILY "Winged helix" DNA-binding domain 418 526 IPR036390 -
Seca10g04543 876 Gene3D - 348 432 IPR042197 -
Seca10g04543 876 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Seca10g04543 876 Gene3D - 182 342 IPR027417 -
Seca10g04543 876 PRINTS Disease resistance protein signature 644 660 - -
Seca10g04543 876 PRINTS Disease resistance protein signature 218 233 - -
Seca10g04543 876 PRINTS Disease resistance protein signature 383 397 - -
Seca10g04543 876 PRINTS Disease resistance protein signature 290 304 - -
Seca10g04543 876 Pfam NB-ARC domain 200 418 IPR002182 GO:0043531
Seca10g04543 876 ProSiteProfiles TIR domain profile. 15 183 IPR000157 GO:0007165
Seca10g04543 876 SUPERFAMILY L domain-like 517 659 - -
Seca10g04543 876 Pfam TIR domain 17 183 IPR000157 GO:0007165
Seca10g04543 876 Gene3D Ribonuclease Inhibitor 517 669 IPR032675 -
Seca10g04543 876 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 185 - -
Seca10g04543 876 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 531 666 IPR044974 GO:0006952
Seca10g04543 876 SMART till_3 16 156 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04543 Seca-Chr10 103712512 103717599 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04543 11 657 WRKY Transcription Factor Family AT4G12020 27.326 1.52e-48 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04543 - - vra:106764825 714.531