Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04536 ATGCGATCACCATCCTTTACCTTTGAATTCACCTACGATGTGTTCCTTAGCTTCAGAGGCTCCGATACTCGCCACGGTTTCACTGGCAATCTCTGGAAAGCTCTTCATGACAAGGGAATCCGCACCTTCATTGATGACAAGGAGCTTCAAAGAGGTGAAGAAATCACACCTGCACTTGTCAAGGCCATTGAAGAGTCCAGGATTGCCATCCCTGTGTTCTCTGCCAACTATACTTCTTCATTTTGCCTCGACGAACTTGTCACCATCATTAAGCTCATCAAGGCAAAAGGTCGATTGGTTTTGCCCATTTTTTATGATGTGGATCCTTCTCATGTCCGTTATCAGACTCAGAGTTATGGAGAAGCACTAGAATATGAACATGAGTTTATTGGGAAGATAGTTAATGAGGTCTCCAGCAAGATTAATCGCATTCCCTTACATGTTGCGGATTACCCTATTGGACTAGAGTCTCGAATGCTTGAAGTAATGTCACTTTTGGATGTTGGATCTGGTGATGGAGTCCACATGGTAGGGATCCATGGCATTGGTGGAATAGGTAAAACAACACTTGCTCGAGCAGTTTATAATTCTATTGCTGACTCATTTGAAGGTTTATGTTTTCTTGATGATGTGAGAGAAAATTCGATTAAACATGGATTAATTCATCTCCAAAAGACGCTTCTTTCTGAAATAGTTGGAGAGAAGGATATTAAGATAGGAAGTGTTCATAAAGGAATTTCAATTATAATGCATAGGCTCCACCGAAAAAAGGTTCTTTTGATTCTTGATGATGTTGACAATTTAGAACAGTTGCATGCAACTGTTGGAGGGCCTAATTGGTTTGGTAACGGCAGCAGAGTCATTATTACAACTCGGGACACACATTTGTTGACTAGACATGGGATTGAGAAAAGATATAAGGCAGTGGAATTAAATGAGGAAGAAGCACTTGAATTGCTTTGTTGGAATGCTTTTAGAAATGACATGGTTGATCCAAGTTATGAGTTCATTTTAAACCAAACATTAGCTTATGCTTCTGGCCTTCCGCTGGCTTTAGAAGTTATAGGTTCCCTTTTGCTTGGAAAAAACATTCAAGAATGGGGATCTGCAATTGATGGGTTTAAACAAATTCCTTGTAAAAGAATCCAAGATAAACTTGAAGTAAGCTATAATGCTTTAGAAGAACAACAAAAGAAAATTTTTCTTGACATTGCTTGTTGTCTTAAAGGATACGAATTGACAGAGGTTGAAGAAATACTTTGCGCTCATTATGGTGTCCCTGTGAAATATGGTATTGGAGTATTGGTTGATAAATCTCTCATAAAGATTACTTGGCGGGGTAAGATGATAGTGACAATGCATGACTTGATAGAGGACATGGGCAAAGAAATTGTTCGACAAAGATCACCACAAGAGCTAGGAAAACGTAGCAGGTTATGGTTTCATGAAGATATAGTTCAAGTTTTAGAAGAAAATTTGTCTTCATCCTTCACCTATGATGTGTTCCTCAGCTTCAGAGGCCCAGATACTCGCCACAATTTCATTGGCTTTCTCTACAAGGCTCTTTGTGACAAGGGAATCCACACCTTCATTGATGATGAGGAGCTTCCAAGAGGAGATGAAATCACACCAGCACTTGTCAAGGCCATCAAAGAGTCCAGTGTTGCCATTCCTGTATTCTCTGAGAACTATGCTTCTTCTTACTTCTGCTTAGATGAACTTGTCAACATCATTGAGCATGTCAAAGGGATTGGTAGGTTGGTTTTGCCGGTTTTCTACAAGGTGGATCCTTCTCATATGCGCCATCAGACTGGGAGTTATGGAGAGGCACTGGCCAAGCATGAGGGCAGGGATGGATATGAATACAAGCTTATCGAGAGGATTGTGGAAGAGGTCTCCAACAATATTAGGCGCAGTCCATTACTACATGTTGCAGATCACCCTGTTGGGTTGGAGTCTCGAATGCATAAAGTAATGTCACTTTTGGATGTTAAATCTAGTGATGAAGTTCTCATGGTAGGGATCTATGGACTTGGAGGAATAGGTAAAACAACCCTTGCTCGAGCAGTTTATAATTCCATTGCTAACACATTTGAATTTCAAGGTTCATGTTTTCTTCATAATGTGAGAGAAAAATCAACTAAACAACATGGCTTAGAACATCTCCAAGAGGAGCTCCTTTCCAAGACAATTGGATTGAACGTGAAGCTAGGAGATGTCAGTGAAGGAATTCCAATAATAGAGCAAAAGCTACAACGGAAGAAGGTTCTTTTGATTCTTGATGATGTTGACAATGAGAAGCAGTTGAAGGCTATGGTTGGAGAACCTAATTGGTTTGGTCCGGGCAGCAGGGTCATCATTACCACTCGGGACAAACACTTGTTAGTAAGTCATGCGGTTGAGAGAACATATGAAATATATAAGTTAAACGAAGAGGAAGCTCTTGAATTGTTTAAGTGGAATGCATTTAAAAAAACTGACAAAGTTGATCCAAGTTATGAGAACATTTTAAAGGAAGCAGTAGTTTATGCTTCTGGCCTTCCGTTGGCTTTGGAAGTTATAGGTTCCCTTTTGCATGGGAAAAGTATTCAAGAATGGAGATCTGCAATTGATAGGTTTAAAGAAATTCCCAGCAAAGAAATCCTAGACAAACTTAAAATAAGCTGTGATGGTTTAGAAGAAAATCAACAGAAAATTTTTCTTGACATTTCTTGTTGCCTCAAAGGATTTACTCTGGAAGAGATTGAAGAGAAACTTTCTGCTCATTATGGAGTCTGTGTGAAATATGACATTAGAGTGTTAATCGATAAATCTCTCATAAAGATTCATGGGCGGAATTGTGTGACAATGCATGACTTGATAGAGGATATGAGAAGAGAAATTGTTCGACAAGAATCACCGAAAGATCTTGGAAAATGCAGTAGGTTATGGTTTCATGAAGATATAATTCAAGTTTTAGAAGACGATACGGGAACAAGTGAAATTGAAATGATATATCTCAATTCTTGGTTGCGTGAAGAAGTAAAATGGGATGGTGAGGCTTTCAAGAAGATGAAAAACCTCATAACTCTTATTATACGTCATACCAAGTTTTGCAAAGGTCCTGAGTATCTTCCAAACAACTTAAGAGTATTGGAATGGATGATATATCCTTCACCGGATTTGCCCCCTGATTTTCATCCGAAGAATCTTTCTACATGCAACTTATTCGGAGGACGACTCACATCATTTGAGATGCATGGGAAGTTGATGAATATGAGAGTTTTAAAGCTTGACTTCTGCAAAGGTTTAACAAGAATACCCGATGTATCTTGTCTCCCAAATTTAGAAAGTTTTTCATTTCAATGTTGTGAGAATCTAGTTACAATTCACGATACAGTTGGGTTGCTGCATAAACTTAAATACTTGGATGCTCATCGATGCAGCAAGATTAAGAAATTTCCACCCCTCCGATTGCCGTCTCTTGAAAAACTCGATCTTTTCTGTTGCTCTAGCCTTGAGAGTTTTCCAGAAATATTAGTAAAGATGGAAAATATGAGAGAGCTTGACTTGGTTGGAACTCCCATAAAAGAATTCCCATCTTCATTTGGGAATCTTAGTGGGCTTCAAATGTTAAGATTGAAAGATAAAGAAATTTTTCAGTTTGCAAAAGGTAGCATTCTCATTATGCCACAGTTGGCTGAGATTTATAACACAGAGGACGAAGAATTTCTGACAAGAAAGGACCACAAATTTCTGATAAGAAAGGACGAAGAATTTCTGTCTCTCATGGACTTCCGTTCAAATGAGTTTTTGGCATTTTGTCTCATATGGTGTGCTAACCTGAAAGAATTAGAATTACGTGGAAGTGATATCACAGTTGTTCCTGAATGCATCAAAGAATGCCGCTTTTTACGGAAGCTTGTTTTGGATGGTTGCAAACAACTTAAAGAAATCAGAGGGATTCCACCCAGCCTACGGGAGATTTCTTTGAATGGATGCTACAGACTTAAAGAAATCAGAGGGATTCCATTTCCACACAGCCTACAATATTTATCTGCATTAGGATGCTTCTCTTTGAGTTTGTCATGTAGAAGGATGTTACTGAATCAGGTTAGGTTTGGTTTTTCTATGTGTTTTTGTTTATAA 4128 0.3871 MRSPSFTFEFTYDVFLSFRGSDTRHGFTGNLWKALHDKGIRTFIDDKELQRGEEITPALVKAIEESRIAIPVFSANYTSSFCLDELVTIIKLIKAKGRLVLPIFYDVDPSHVRYQTQSYGEALEYEHEFIGKIVNEVSSKINRIPLHVADYPIGLESRMLEVMSLLDVGSGDGVHMVGIHGIGGIGKTTLARAVYNSIADSFEGLCFLDDVRENSIKHGLIHLQKTLLSEIVGEKDIKIGSVHKGISIIMHRLHRKKVLLILDDVDNLEQLHATVGGPNWFGNGSRVIITTRDTHLLTRHGIEKRYKAVELNEEEALELLCWNAFRNDMVDPSYEFILNQTLAYASGLPLALEVIGSLLLGKNIQEWGSAIDGFKQIPCKRIQDKLEVSYNALEEQQKKIFLDIACCLKGYELTEVEEILCAHYGVPVKYGIGVLVDKSLIKITWRGKMIVTMHDLIEDMGKEIVRQRSPQELGKRSRLWFHEDIVQVLEENLSSSFTYDVFLSFRGPDTRHNFIGFLYKALCDKGIHTFIDDEELPRGDEITPALVKAIKESSVAIPVFSENYASSYFCLDELVNIIEHVKGIGRLVLPVFYKVDPSHMRHQTGSYGEALAKHEGRDGYEYKLIERIVEEVSNNIRRSPLLHVADHPVGLESRMHKVMSLLDVKSSDEVLMVGIYGLGGIGKTTLARAVYNSIANTFEFQGSCFLHNVREKSTKQHGLEHLQEELLSKTIGLNVKLGDVSEGIPIIEQKLQRKKVLLILDDVDNEKQLKAMVGEPNWFGPGSRVIITTRDKHLLVSHAVERTYEIYKLNEEEALELFKWNAFKKTDKVDPSYENILKEAVVYASGLPLALEVIGSLLHGKSIQEWRSAIDRFKEIPSKEILDKLKISCDGLEENQQKIFLDISCCLKGFTLEEIEEKLSAHYGVCVKYDIRVLIDKSLIKIHGRNCVTMHDLIEDMRREIVRQESPKDLGKCSRLWFHEDIIQVLEDDTGTSEIEMIYLNSWLREEVKWDGEAFKKMKNLITLIIRHTKFCKGPEYLPNNLRVLEWMIYPSPDLPPDFHPKNLSTCNLFGGRLTSFEMHGKLMNMRVLKLDFCKGLTRIPDVSCLPNLESFSFQCCENLVTIHDTVGLLHKLKYLDAHRCSKIKKFPPLRLPSLEKLDLFCCSSLESFPEILVKMENMRELDLVGTPIKEFPSSFGNLSGLQMLRLKDKEIFQFAKGSILIMPQLAEIYNTEDEEFLTRKDHKFLIRKDEEFLSLMDFRSNEFLAFCLIWCANLKELELRGSDITVVPECIKECRFLRKLVLDGCKQLKEIRGIPPSLREISLNGCYRLKEIRGIPFPHSLQYLSALGCFSLSLSCRRMLLNQVRFGFSMCFCL. 1376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04536 1375 Gene3D Ribonuclease Inhibitor 978 1234 IPR032675 -
Seca10g04536 1375 Gene3D Ribonuclease Inhibitor 1250 1367 IPR032675 -
Seca10g04536 1375 Pfam NB-ARC domain 162 393 IPR002182 GO:0043531
Seca10g04536 1375 Pfam NB-ARC domain 652 877 IPR002182 GO:0043531
Seca10g04536 1375 Coils Coil 379 399 - -
Seca10g04536 1375 ProSiteProfiles TIR domain profile. 10 141 IPR000157 GO:0007165
Seca10g04536 1375 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 499 1209 IPR044974 GO:0006952
Seca10g04536 1375 SMART AAA_5 669 810 IPR003593 GO:0016887
Seca10g04536 1375 SMART AAA_5 173 314 IPR003593 GO:0016887
Seca10g04536 1375 SUPERFAMILY Toll/Interleukin receptor TIR domain 490 615 IPR035897 -
Seca10g04536 1375 Gene3D - 808 893 IPR042197 -
Seca10g04536 1375 Gene3D - 310 394 IPR042197 -
Seca10g04536 1375 ProSiteProfiles TIR domain profile. 497 636 IPR000157 GO:0007165
Seca10g04536 1375 Gene3D - 493 635 IPR035897 -
Seca10g04536 1375 SUPERFAMILY "Winged helix" DNA-binding domain 381 490 IPR036390 -
Seca10g04536 1375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 404 IPR027417 -
Seca10g04536 1375 SMART till_3 498 635 IPR000157 GO:0007165
Seca10g04536 1375 SMART till_3 11 151 IPR000157 GO:0007165
Seca10g04536 1375 Gene3D - 143 308 IPR027417 -
Seca10g04536 1375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 630 903 IPR027417 -
Seca10g04536 1375 Pfam TIR domain 499 618 IPR000157 GO:0007165
Seca10g04536 1375 Pfam TIR domain 12 125 IPR000157 GO:0007165
Seca10g04536 1375 SUPERFAMILY L domain-like 962 1358 - -
Seca10g04536 1375 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 132 IPR035897 -
Seca10g04536 1375 Gene3D - 10 142 IPR035897 -
Seca10g04536 1375 PRINTS Disease resistance protein signature 844 858 - -
Seca10g04536 1375 PRINTS Disease resistance protein signature 750 764 - -
Seca10g04536 1375 PRINTS Disease resistance protein signature 672 687 - -
Seca10g04536 1375 PRINTS Disease resistance protein signature 1150 1166 - -
Seca10g04536 1375 Gene3D - 636 802 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04536 Seca-Chr10 103601243 103627537 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04536 4 503 WRKY Transcription Factor Family AT4G12020 27.528 6.61e-38 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04536 - - gmx:100814962 936.406