Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04534 ATGGCTCTACGATCATCCTTGTCTTCCTTCACCTATGGATTTAGCTATGATGTGTTCCTTAGTTTCAGAGGGACAGACACTCGCTTCGGTTTTACTGGTTATCTCTACAAATCACCGTGTGACAGTGGAATCAAAACCTTCATTGATGATGATGAGCTTCGGAGAGGGGAGGAAATCACACCAGCACTTGTCAAGGCCATTGAAGAATCCAGAATTGCCATCCCTGTGTTCTCTACCAACTATGCTTCTTCTTCCTTTTGCTTAGATGAATTTGTCAACATTATTGAGCGAGTCAAGGCAAAGGGTCGGTTGGTTTTGCCAGTTTTCTATGACGTGGATCCCTCTCATGTAAGACATCAAAAAGGGACTTATGATGAAGCGTTGACTAAGCATGAGGAGAAGTTCAAGGACAACATGGAGAAGGTGCAAAACTGGAGGAAGGCTCTACATCAAGCAGCTAACTTGTCGGTTGGCACTTTAAGCGGTAGGGATGGATATGAACATGAGTTTATTGGGAAGATCGTTAAAGAGGTCTCAAGAAAGATTAAACGTGCTGCTTTACATGTTGCTGATTATCCAGTTGGATTAGAGTCTCAAGTGCTAAAGGTAAATTCACTTTTGGATGTTGGGTCTGATGATAGAGTTCACATGGTAGGGATCCATGGGATGGGTGGAATAGGTAAGACAACACTTGCTCTAGCGGTTTATAATTTGGTTGCCGACCATTTTGAAGGATTATGTTTTCTTGAAAAAGTTAGAGAAAATTCAGAGAAATATGGGTTACTATATCTCCAAAAGATTTTTCTTTCTGAAATACTTGGAGAGATAAATATTGAATTAACAAGTGTCAAACAAGGAATTTCAATAATACAACATAGGTTGCAAAGAAAGAAGGTTCTTTTGATCTTAGATGATGTTAACAAAAAGGAGCAATTGCAGACTATTGTTGAAAGACCTGATTGGTCTGGTCTCGGTAGCAGAGTCATCATCACGACTCGGGATGAACAATTGCTAGCATGTCACGAGATTGAAAAAACATATGGGGTGGAAGAATTGAGTGAAAAAGATGCTCTTGAGTTGCTCAAATGGAAAACTTTTAAGACCAAGAAAATTGATCCAAGTTATCTAGACATTTTAAAACGTACAGTGACTTATGCTTCCGGCCTTCCATTGGCATTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAACTTCAACAGAATGGGAGCTTGCACAGTATGAAAGGATTCCTAATAAAGAGATCCAAAAGATACTTGAAGGATATGGATTTATAGAGGTCAAAGATATACTTTGTGCTCATTATGGTCACCACATGGAATATCACATTGGAGCGTTGGTTGAAAAATCTCTCATAAAGATCTGGATTGATACAGTGACACTCCATGACTTGATAGAGGACATGGTAAAGAAATTGTTCGAAAAGAATCACCGAAAGAGGTTGGAAAACGCAACAGGGTGGTTATCTAAAGATATATTCCAAGTTTTAAAAAATAATAAGGAGTTCATGAATATGAGAGTTTTAAATTTTGACAACTGTGACTGTTTAACTCGGATAAGTGATGTATCTGGTCTCCCAAATTTAGAAAAAATTTCTTTTCAAAATTATAAGAATTTAATTACAATTCATGATTCAGTTGGGTTGTTGGATAAATTGGAAACCTTGAATGCGTTTGGCTGCATCAAGCTTAAGAAATTTCCACCCCTCCATTTGATCTCTCTTGAAAAACTTGATCTTTCATATTGTCCTAGTCTAGAAACTTTTCCAGAAATATTAGTAGACATGAAATATATGACAGAGCTTAAGTTGTATGAAACTCACGTGAAAGAATTGCCATTATCATTTCAAAATCTTAATTGGCTTGAAAAGTTATATCTGTCTACTAATGGAACTATTCAATTACCAATAAGTAGCATTGTCATGATGCCAGAGCTGACTGAGATTAGAGTCACAACATCAAGGGGTGGGTTGAAATTGAAAAAACAGGAAGAGGGTGAAGACAAATTGAGCTCAATGCTACCTTCAAAAGTAGAATATTTGGGCCTCTTTAATTGCTACTTGTCAGATGAATTTTGGTCAATAGGTGTCACGTGGTTCACTAATGTGAAAGAATTAGACCTATCGGATAATCAATTCACAATTATTCCTGAATGCATTAAAGAATGTCCCTATTTATGGAAGCTTTGGTTGGACAATTGTGAACAACTTCGAGAAATTAGAGGGATTCCTCCGAGCTTGAAAGATTTCTCTGCATGCAATTGCAAATCCTTAAGTTACTCAAGTAGAAGCATGTTACTCAAACAGGTTAGGTTTTGA 2334 0.3732 MALRSSLSSFTYGFSYDVFLSFRGTDTRFGFTGYLYKSPCDSGIKTFIDDDELRRGEEITPALVKAIEESRIAIPVFSTNYASSSFCLDEFVNIIERVKAKGRLVLPVFYDVDPSHVRHQKGTYDEALTKHEEKFKDNMEKVQNWRKALHQAANLSVGTLSGRDGYEHEFIGKIVKEVSRKIKRAALHVADYPVGLESQVLKVNSLLDVGSDDRVHMVGIHGMGGIGKTTLALAVYNLVADHFEGLCFLEKVRENSEKYGLLYLQKIFLSEILGEINIELTSVKQGISIIQHRLQRKKVLLILDDVNKKEQLQTIVERPDWSGLGSRVIITTRDEQLLACHEIEKTYGVEELSEKDALELLKWKTFKTKKIDPSYLDILKRTVTYASGLPLALEVIGSNLFGKTSTEWELAQYERIPNKEIQKILEGYGFIEVKDILCAHYGHHMEYHIGALVEKSLIKIWIDTVTLHDLIEDMVKKLFEKNHRKRLENATGWLSKDIFQVLKNNKEFMNMRVLNFDNCDCLTRISDVSGLPNLEKISFQNYKNLITIHDSVGLLDKLETLNAFGCIKLKKFPPLHLISLEKLDLSYCPSLETFPEILVDMKYMTELKLYETHVKELPLSFQNLNWLEKLYLSTNGTIQLPISSIVMMPELTEIRVTTSRGGLKLKKQEEGEDKLSSMLPSKVEYLGLFNCYLSDEFWSIGVTWFTNVKELDLSDNQFTIIPECIKECPYLWKLWLDNCEQLREIRGIPPSLKDFSACNCKSLSYSSRSMLLKQVRF. 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04534 777 PRINTS Disease resistance protein signature 217 232 - -
Seca10g04534 777 PRINTS Disease resistance protein signature 293 307 - -
Seca10g04534 777 PRINTS Disease resistance protein signature 575 591 - -
Seca10g04534 777 PRINTS Disease resistance protein signature 386 400 - -
Seca10g04534 777 SMART till_3 15 155 IPR000157 GO:0007165
Seca10g04534 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 418 IPR027417 -
Seca10g04534 777 Pfam TIR domain 16 183 IPR000157 GO:0007165
Seca10g04534 777 SUPERFAMILY "Winged helix" DNA-binding domain 427 503 IPR036390 -
Seca10g04534 777 ProSiteProfiles TIR domain profile. 14 182 IPR000157 GO:0007165
Seca10g04534 777 SUPERFAMILY L domain-like 499 765 - -
Seca10g04534 777 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 155 IPR035897 -
Seca10g04534 777 Gene3D - 12 180 IPR035897 -
Seca10g04534 777 Gene3D - 351 430 IPR042197 -
Seca10g04534 777 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 752 IPR044974 GO:0006952
Seca10g04534 777 Gene3D Ribonuclease Inhibitor 594 774 IPR032675 -
Seca10g04534 777 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 184 - -
Seca10g04534 777 Gene3D - 181 346 IPR027417 -
Seca10g04534 777 Pfam NB-ARC domain 199 422 IPR002182 GO:0043531
Seca10g04534 777 Gene3D Ribonuclease Inhibitor 492 593 IPR032675 -
Seca10g04534 777 Pfam Leucine Rich Repeat 707 728 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04534 Seca-Chr10 103579027 103582912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04534 194 510 WRKY Transcription Factor Family AT5G45050 28.363 4.91e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04534 - - vra:106764825 832.402