Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04533 ATGGATGATGAGAAGCTTCCAAGAGGAGATGAAATCACACCATCACTTGTCAAGGCCATCAAAGAGTCCAGGACTGCCATTCCTATAATCTCTGAGAACTATGCTTCTTCTTCGTTCTGCTTAGATGAACTTGTGAACATCATTGACCACGTCAAAGGGATGGGTCGGTTGGTTTTTCCGGTTTTCTATAAGGTGGATCCTTCTCATGTGCGCTATCAAACGGGGAGTTATGGAGAGGCACTAGCTAAGCATGAGGAAAGGTTCCCAAATAATATGGAGAAGCTACAAAAGTGGAAGATGGCCCTTCAAAAAACTGCTGACCTGGCCGGCATGCATTTCAAACCTGAGGATGAATATGAATACAAGTTTATTGAGAGGATTGTGAAAGAGATTTCCAGCAAGATTAGTCGCATTCCATTACTACATGTTGCAAATCACCCTGTTGGGCTGGAGTCTCGAATGCTTAAAGTAATATCACTTCTGGATGTTCAATCTGATGATGAAGTTCTCATGATAGGGATACATGGACTTGGTGGAATAGGTAAAACAACCCTTGCTCGAGTAGTTTATAATTCCATTACTAACTTATTTGAGAGTTCGAGTTTTCTTCATAATGTGAGAGAAATTTCAACTAAACAAGGCTTACAAACTCTCCAAGAGATGCTCCTTTCCAAAACAGTTGGCTTCAATGAGAAGCTAGGAGATTACAGTGAAGGAATTCCAAAAATAAAGGAAAAGCTACTAAAAAAGAAGATTCTTTTAATTCTTGATGATGTTGACTACAAGGAGCAATTGGAGGCTTTGTTGGACACCCTAGTTGGTTTGGGCTGGGCAGCAGGATCATCATTACTACTCGAGACAAACACTTACTAG 873 0.4066 MDDEKLPRGDEITPSLVKAIKESRTAIPIISENYASSSFCLDELVNIIDHVKGMGRLVFPVFYKVDPSHVRYQTGSYGEALAKHEERFPNNMEKLQKWKMALQKTADLAGMHFKPEDEYEYKFIERIVKEISSKISRIPLLHVANHPVGLESRMLKVISLLDVQSDDEVLMIGIHGLGGIGKTTLARVVYNSITNLFESSSFLHNVREISTKQGLQTLQEMLLSKTVGFNEKLGDYSEGIPKIKEKLLKKKILLILDDVDYKEQLEALLDTLVGLGWAAGSSLLLETNTY. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04533 290 Pfam NB-ARC domain 152 268 IPR002182 GO:0043531
Seca10g04533 290 Pfam TIR domain 2 134 IPR000157 GO:0007165
Seca10g04533 290 Gene3D - 136 289 IPR027417 -
Seca10g04533 290 PRINTS Disease resistance protein signature 171 186 - -
Seca10g04533 290 PRINTS Disease resistance protein signature 246 260 - -
Seca10g04533 290 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 278 IPR044974 GO:0006952
Seca10g04533 290 SMART till_3 1 108 IPR000157 GO:0007165
Seca10g04533 290 Gene3D - 1 135 IPR035897 -
Seca10g04533 290 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 110 IPR035897 -
Seca10g04533 290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 288 IPR027417 -
Seca10g04533 290 ProSiteProfiles TIR domain profile. 1 135 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04533 Seca-Chr10 103488406 103489405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04533 17 287 WRKY Transcription Factor Family AT4G12020 26.277 1.09e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04533 - - gmx:100814962 301.982