Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04531 ATGTCTTCTGCCGGCGGCGGCGTTACCTCAGGCGAGCCTCGCCAATACTACTGCCACCAGTGCGAGCGCACTGTTTCCATTTCCCTTTCCTCCGGCGATCTTCTCTGCCCCAATTGCAACGGCGGCTTCCTCGAGGAACTCGAAAACCCAATCCCTAATTCTAACCCTAACCCTATCAATCCGTTATTCTCCTTCAGCACCGACTTCCCTGACGCCGGCAACGCCACTGCAACCTTTCCCCTCGTTTTCTCCGGAGGCGCTCAACCTTTCGACGACCTATCCGCCTTATTCGGCAACCGATCGTCGCCGCCTTTCGGCGGGGACTCTGCTGAAGCGTTTAACCCGTTCGTGTTCCTCCAGAACTACGTCCAAACCCTAAGAGCTGGAGGCGCCAACGTCCAGTTCGTGATCGAGAACTCCGGCGACCCGACCGGAGCGTTCCGGATCCCCGGCAATGTAAACCCCGGCGATTACTTCTTTGGGCCGGGCCTTGAGGAGCTAATCCAGCAGCTCGCTGAGAACGACCCCAACCGCCGTGGGACGCCGCCAGCCTCGAAGTCCGCCGTCGAGGGGCTGCCGGACATTTCGGTGACGCAGGAGCTGCTTGCTTCAGATTCGGCGCAGTGCGCGGTGTGCAAAGATACCTTTGCCCTTGGCGAGACAGCGAAGCAGATGCCGTGTAAGCACATTTATCATGCAGATTGCATCTTGCCTTGGTTGGAATTGCACAATTCTTGCCCCGTTTGCCGCTACGAGTTGCCCACTGATGATGCGGACTACGAGCAGAGGGCTCGCCGCGGTGATGGGGCGCCTGCCCAGGTGAATTGGAACCTCGCCGCAGGGGCCGGTGGTTCCTCGGACTCTTCTAGTGGCAGTGGTGGCGGAGGTGGAGGTGGTGATAATTCACAGCGGAGGAGGTTTAGGGTGTCTTTGCCATGGCCCTTTAGGCAATTTACTTCTTCTGTTGCCGAGACTAGTAATGTTGGGAATGCCAACAACAACAGCAGCAGCAATAGCGGAAATAGTAGTGGGCAATCAAATCCTGAAAATAGGGGGAATCAGCATTTTGAGTCGGAGACCAGACAAGAAGATCTCGACTGA 1101 0.5704 MSSAGGGVTSGEPRQYYCHQCERTVSISLSSGDLLCPNCNGGFLEELENPIPNSNPNPINPLFSFSTDFPDAGNATATFPLVFSGGAQPFDDLSALFGNRSSPPFGGDSAEAFNPFVFLQNYVQTLRAGGANVQFVIENSGDPTGAFRIPGNVNPGDYFFGPGLEELIQQLAENDPNRRGTPPASKSAVEGLPDISVTQELLASDSAQCAVCKDTFALGETAKQMPCKHIYHADCILPWLELHNSCPVCRYELPTDDADYEQRARRGDGAPAQVNWNLAAGAGGSSDSSSGSGGGGGGGDNSQRRRFRVSLPWPFRQFTSSVAETSNVGNANNNSSSNSGNSSGQSNPENRGNQHFESETRQEDLD. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04531 366 MobiDBLite consensus disorder prediction 278 304 - -
Seca10g04531 366 Pfam zinc-ribbon 15 47 IPR039525 GO:0061630
Seca10g04531 366 MobiDBLite consensus disorder prediction 321 353 - -
Seca10g04531 366 FunFam E3 ubiquitin-protein ligase RING1-like 170 256 - -
Seca10g04531 366 Pfam Ring finger domain 208 250 IPR001841 -
Seca10g04531 366 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
Seca10g04531 366 CDD RING-H2_RNF126-like 208 250 - -
Seca10g04531 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 111 254 - -
Seca10g04531 366 MobiDBLite consensus disorder prediction 279 297 - -
Seca10g04531 366 SMART ring_2 209 249 IPR001841 -
Seca10g04531 366 SUPERFAMILY RING/U-box 195 256 - -
Seca10g04531 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 256 IPR013083 -
Seca10g04531 366 MobiDBLite consensus disorder prediction 321 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04531 Seca-Chr10 103460043 103461143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04531 167 265 C3H Transcription Factor Family AT5G15820 54.545 1.67e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04531 K11982 - gmx:100818686 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04531 10 103460043 103461143 Seca10g04531 10 103460043 103461143 ECH