Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04516 ATGGAGTGCAATAAGGATGAGGCCATTAGAGCTAAAGAAATTGCTGAGAAAAAGTTTGTTGCAAAGGATATTTTGGGAGCAAGAAAGTTTGCTTTGAAGGCCCAAAGTTTATTTCCTAGTCTTGATGGTATTTCTCAAATGTTAACAGTAATTAATGTGTATATTTCTGCTACTAATGAAATAAATGGTAAAGTAGTCCTAAATTGGTATGGTATACTTGGTGTGGATCCCCTGGCTGATGGTGACACATTGAGAAAACAATATAGAAAGCTGGTTCATATGCTTCACCCTGATAATAACAAGTCCATTGGTGCAGATTCGGCCTTTAAACTAGTTTCAGAGGCATGGAATATACTATCAGATAAGGCAAAAAGGGTAGCATATGATAAGCAGATAAATGCAATGACTCAGGGGAAAACTGCTGAAGAGATTAGCAAGAAACCAAATCAAATTCAGACAGATTCTAATGACAAAACAACAGTGAAAGAGATCATTGGAAATGCCTACGAAAAAGCAAATGAGGAAGGAGGAAAATCTGTAAAAAACTTAGATGGAAGAATGAATGGATCCGAAGCCATGAATTTATTTGCAGGCACTACCACATATGATGACAAGGAGGACATGTTATCAATAGATGTTCCAGATCCTCATTTCTATTGTTTTGACAAGGATCGAATTGAAGGATCTTTTGGTGAAAATCAAGTATGGGCTGCATTTGATGAAGAAGAAGGAATGCCTCGATATTATGCAATAATACACAATGTCATTTCTATGAATCCATTCAAGATGCAGTTCAGTTGGCTCCAGATGAAGAAGACCAAGGTTGAAAGGACCCCAACTCTTAATTGGGGTGCGTCACGCTTTTCAAGAGCTTGTGGGAATTTCATAATGGGAAGACGTGAAATCACTAACACATTCAATTTTTTCTCTCACAAAGTGAGGTATGAAAAGGGTAATGATGGAACTGTTTTTATATATCCCAAGAAAGGGGATGTTTGGGCACTCTATAGAAATTGGTCTTCCAAATGGAATAGACTAACACCTGATGAGGTGACACAAAAGTATGATATAGTTGAAGTACTTGATGTTTTCAATGATTTCATTGTCATTCCTCTGGTCAAAGTGGCTGGTTTTAGGACAATATTTCGCTGTGAGTTGGATTTGAGAGAAACCAAGGTCATTCCAAGGAAAGAAATATTACGGTTCTCTCATCAGGTTCCTTCAACCATACTTAGTGGTGAAGAAGCTCCAGATGCCCCAAAGGGTTGTTGGGAGTTGGACCCAGCAGCTATTTCATCTGAACATCTTGAGGTGATCGAAGTTGTGAAGGACAAAGATATGGTTATGGTCAAGAATGAGGATACTGTAATTAAAGAAACAGTAGATGATAGCATGAAAGAAACTGATAGTGAGGAAATGAACAATGATATGGAACACATGGCGAAGAAAAAAAGGAGATATTGA 1464 0.377 MECNKDEAIRAKEIAEKKFVAKDILGARKFALKAQSLFPSLDGISQMLTVINVYISATNEINGKVVLNWYGILGVDPLADGDTLRKQYRKLVHMLHPDNNKSIGADSAFKLVSEAWNILSDKAKRVAYDKQINAMTQGKTAEEISKKPNQIQTDSNDKTTVKEIIGNAYEKANEEGGKSVKNLDGRMNGSEAMNLFAGTTTYDDKEDMLSIDVPDPHFYCFDKDRIEGSFGENQVWAAFDEEEGMPRYYAIIHNVISMNPFKMQFSWLQMKKTKVERTPTLNWGASRFSRACGNFIMGRREITNTFNFFSHKVRYEKGNDGTVFIYPKKGDVWALYRNWSSKWNRLTPDEVTQKYDIVEVLDVFNDFIVIPLVKVAGFRTIFRCELDLRETKVIPRKEILRFSHQVPSTILSGEEAPDAPKGCWELDPAAISSEHLEVIEVVKDKDMVMVKNEDTVIKETVDDSMKETDSEEMNNDMEHMAKKKRRY. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04516 487 ProSiteProfiles dnaJ domain profile. 68 132 IPR001623 -
Seca10g04516 487 Pfam Domain of unknown function (DUF3444) 210 415 IPR024593 -
Seca10g04516 487 SUPERFAMILY Chaperone J-domain 67 133 IPR036869 -
Seca10g04516 487 SMART dnaj_3 67 124 IPR001623 -
Seca10g04516 487 MobiDBLite consensus disorder prediction 460 487 - -
Seca10g04516 487 Gene3D DnaJ domain 67 180 IPR036869 -
Seca10g04516 487 MobiDBLite consensus disorder prediction 460 481 - -
Seca10g04516 487 CDD DnaJ 68 121 IPR001623 -
Seca10g04516 487 PANTHER BNAC03G44070D PROTEIN 1 431 - -
Seca10g04516 487 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Seca10g04516 487 PRINTS DnaJ domain signature 124 143 IPR001623 -
Seca10g04516 487 PRINTS DnaJ domain signature 88 103 IPR001623 -
Seca10g04516 487 PRINTS DnaJ domain signature 70 88 IPR001623 -
Seca10g04516 487 PRINTS DnaJ domain signature 104 124 IPR001623 -
Seca10g04516 487 Pfam DnaJ domain 68 129 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04516 Seca-Chr10 103134896 103136359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04516 4 135 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 39.706 4.99e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04516 - - ahf:112751648 336.65