Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04510 ATGCTTGTGCCGAGGAATATAGGTTCATCTACTAGATTTCTACTAGATTTTAAACCAAATGAGATTGCTGGGACAAAGGAGCTTCGTTGGAGTCTTGGGTGGAACGCTGTTGGCGGGGAGCAAGTAACAATGGCTATGGTCCCTTCCCATTTCCATTCCATCAAAAGTGTTTGTGGCATTCGCCAAAATTGGAGCGTGAGAGTTAAATTGGTGAGGGTGTGGAACATGTCTGCTGTTGCTACTCCAAATGACCCCTATGCGACCCAAATGGTTTTCATTGATGAAGAGGGTGGAAGGATTGAAGCAACCGTTCCGAAGCAACACATGAACAAGTTCTCTCACTCTGTCATTGAGGGACAGATTTATAGGATCACCAATTTTGGAGTCCTTCGCAACGGTGGAAAGTTCAGGGCAGCTGTTCATGAGTTTAAGCTCATATTCAATGCAACTACAAAGGTTATTCCGTGCCCGAATGTTTCCATCTCATTATCTGGGTTTGCACTCTTGAAGAGTGAGGACATCAATAAAACCAATGGGCGCTCAGAATACCTGTTAGATTTCATGGGCATCGTGACAGCTGTTTCAGAGGAGATCAATATGAACAAGGAGGGCAGGGAGACACGGCTCATGCTCATTGATTTAGTGGATGAGATGAGACAAATCCGGTTGGCATTGTTTGGAGACATGATAGATGTGGTTGCTGGATATTTGTCTCTTCCTCGATCTGGCTTGCCAGTTCTCATCATTCAATTAGCGAAGGTTAATCTTTACAAAGGGGAAGTTGGCATTCAAAATGTGATGAACGCATCCAAGGTTTATTGGAACCCGGATATTGCTGAGGCTATAGAGTTCAAGAATGGGTTAGCTGTTCACGAGATAGAAACAGATGTTGAAATTCAAACCATTTCTCAAACCAGACGCCCATTCTCTATGAAAGATGATTTCCTTAAATTATATCCCAAAAAGTCTCTGGCAGAACTCCAACAATTTGAAGAGGGTGGGTTCTTTGTTATTCTGGGCAGAATTGAACAAGTCATCCAAGATGGTTTCTGGTGGTACATGGCATGTTCTTGCATGAAGTCTGTTTCCTATGATGATGGGGTTCCAATTTGTGATGATTGTGGTTCATATGTGATTGATCTGACTCCTAGGTACAAGCTAAAAATTGAGGTGTCTGATGCAACAGATAGTGCTCAACTCATTTTATTTGACTCTGAGTGTTATGCAATGCTTCACAAATCCTGTCGTGACATGTTACTTGAGATTAAGGTGAGCCTATCAAAGCTGTTTTTTTCTTCTTTCATTAATTACTTGCCCTACTGTAAATCTTGTGATCATCCATTTGATATCTACAACCTGGTTGGGAGTGAGTTCCTTTTCCGAGTTGAGAGGAAGGATGATCCTTCATTCACCTATGAGGAATGCTTTCGGGTTAAGAGGGTCTCCTGTTATCCAGCTATAATGGCTGAGTATAAAATGGGATTGGATGATGACACTCCATTGAAGCAGAAATTTGCTCCTCCTTTTAGCAAAATTACTGGGGGAGAAGCCATTGATTGTGTCAAGGAATTGTCCCTTCTATGTGATTCTGCTATAACTGAGATAGAAATTAGCCCATTAACAACTATCCTGTCTCCCTTTGATTCCGTTGATGGTGGCAGTGTTAACAAGAGGGAGGGAGAGCAATCTACTGAGGGACTGTATGAGAGGAAGAAACGTCCCAGGCAGAGGTTGATCAAGGTTGAGAAGAATTGA 1755 0.4239 MLVPRNIGSSTRFLLDFKPNEIAGTKELRWSLGWNAVGGEQVTMAMVPSHFHSIKSVCGIRQNWSVRVKLVRVWNMSAVATPNDPYATQMVFIDEEGGRIEATVPKQHMNKFSHSVIEGQIYRITNFGVLRNGGKFRAAVHEFKLIFNATTKVIPCPNVSISLSGFALLKSEDINKTNGRSEYLLDFMGIVTAVSEEINMNKEGRETRLMLIDLVDEMRQIRLALFGDMIDVVAGYLSLPRSGLPVLIIQLAKVNLYKGEVGIQNVMNASKVYWNPDIAEAIEFKNGLAVHEIETDVEIQTISQTRRPFSMKDDFLKLYPKKSLAELQQFEEGGFFVILGRIEQVIQDGFWWYMACSCMKSVSYDDGVPICDDCGSYVIDLTPRYKLKIEVSDATDSAQLILFDSECYAMLHKSCRDMLLEIKVSLSKLFFSSFINYLPYCKSCDHPFDIYNLVGSEFLFRVERKDDPSFTYEECFRVKRVSCYPAIMAEYKMGLDDDTPLKQKFAPPFSKITGGEAIDCVKELSLLCDSAITEIEISPLTTILSPFDSVDGGSVNKREGEQSTEGLYERKKRPRQRLIKVEKN. 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04510 584 CDD RPA1_DBD_A_like 65 153 - -
Seca10g04510 584 SUPERFAMILY Nucleic acid-binding proteins 170 289 IPR012340 -
Seca10g04510 584 Pfam Domain of unknown function DUF223 90 160 IPR003871 -
Seca10g04510 584 Gene3D - 158 296 IPR012340 -
Seca10g04510 584 SUPERFAMILY Nucleic acid-binding proteins 50 160 IPR012340 -
Seca10g04510 584 Gene3D - 51 157 IPR012340 -
Seca10g04510 584 CDD RPA1_DBD_B_like 186 285 - -
Seca10g04510 584 Pfam Replication factor-A C terminal domain 335 418 IPR013955 -
Seca10g04510 584 SUPERFAMILY Nucleic acid-binding proteins 320 419 IPR012340 -
Seca10g04510 584 CDD RPA1_DBD_C 327 483 IPR047192 -
Seca10g04510 584 Gene3D - 314 492 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04510 Seca-Chr10 103057633 103060423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04510 44 418 Core DNA Replication Machinery Family AT5G08020 23.785 2.60e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04510 - - lja:Lj6g3v0884310.1 336.265