Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04503 ATGGAGTGCAATAAGGATGAGGCCATTAGAGCTAAAGAAATTGTTGAGAAGAAGTTTGTTGCAAAGGATACTTTGGGAGCAAGAAAGTTTGCTTTGAAGGCCCAAAGTTTATTTCCTAGTCTTGATGGTATTTCTCAATTGTTAACAGTAATTAATGTGTATAATTCTGCTACTAATGAAATAAATGGTGAAGTAGTCCTAAATTGGTATGGTATACTTGGTGTGGATCCCCTGGTTGATGATGACACATTGAGGAAACAGTATCAAAAGATGGTTCATATGCTTCACCCTAATAATAACAAGTCCATTGGTGCAGATTGGGTCTTTAAATTAGTTTCAGAGGCATGGAACATACTATCAGATAAGGCTAAAAGGGTAACATATGATGAGAAGATAAATGCATTGACTCAGGGGAAAACTGTTGAAGAGATTAGCAAGAAACCAAGTCAAATTCAGACAGATTCTAATGACAAAACAACAGTGAAAGAGATCTTTGGAAATACCTACCAAAAAGAAAATGAGGAAGGAGGAAAATCTGTAAGAAACTCAGATGGAAGAATGAATGGATCCGAAGCCATGAATTTATTTGCAGACACTATCACATATTTTGACATGGAGGACATGTTATCAATCGAAGCTCCATATCCTCATTTCTATAATTTTTACATGGATCGAATTGAAGGATCTTTTTGTGAAAATCAAGTATGGGCTTTATTTGATGAACAAGAAGGGATGCCTCGATATTATGCAATAATACACAATGTCATTTCTATGAATCCATTCAAGATGAAGTTCACCTGGCTCGACATGAAGAAGACTGAGGTTGAAAGGACACCAACTCTGAATTGGGGTGTGTCACGCTTTTCAAGAGCTTGTGGGAATTTCATAATGGGAAGACATGAGATCACTAACACATTCAATTTTTTCTCTCACAAAGTTAGATATAAAAAAGGTAATGATGGAACTATTTTTATATATCCCAACAAAGGGGATGTTTGGGCACTCTATAGAAATTGGTCTTCCAAATGGAATAGATTAACACCTGATGAGGTGACACAAAAGTATGATATTGTCGAAGTACTTGATGTTTTCAATGATTTCATTGTCATTCCTCTGGTCAAAGTGGCTGGTTTCAGGACAATATTTCGTCGTGAGTTGGATTTGAGAGAAATCAGGGTCATTCCAAGGAAAGAAATATTGCGGTTATCTCATCAGGTTCCTTCAACCATACTTACTGGTGAAGAAGCTCCAGATTCCCCAAAGGGTTGCTGGGAGTTGGACCCAGCAGCTATTTCATCTGAACATCTTGAGGTAATTGAAGTTGTGAAGGAAAAAGACATCGTTATGGTCAACAATGAGGATACTATGATTAAAGAAACAACAGATGATAGCATGAAAGAAGCTGATAGTGAGGAAATGAACAATGATATAGGAACACATGTGGAAGAAAAGAAGGAGATATTGAAACTTTAG 1473 0.3666 MECNKDEAIRAKEIVEKKFVAKDTLGARKFALKAQSLFPSLDGISQLLTVINVYNSATNEINGEVVLNWYGILGVDPLVDDDTLRKQYQKMVHMLHPNNNKSIGADWVFKLVSEAWNILSDKAKRVTYDEKINALTQGKTVEEISKKPSQIQTDSNDKTTVKEIFGNTYQKENEEGGKSVRNSDGRMNGSEAMNLFADTITYFDMEDMLSIEAPYPHFYNFYMDRIEGSFCENQVWALFDEQEGMPRYYAIIHNVISMNPFKMKFTWLDMKKTEVERTPTLNWGVSRFSRACGNFIMGRHEITNTFNFFSHKVRYKKGNDGTIFIYPNKGDVWALYRNWSSKWNRLTPDEVTQKYDIVEVLDVFNDFIVIPLVKVAGFRTIFRRELDLREIRVIPRKEILRLSHQVPSTILTGEEAPDSPKGCWELDPAAISSEHLEVIEVVKEKDIVMVNNEDTMIKETTDDSMKEADSEEMNNDIGTHVEEKKEILKL. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04503 490 ProSiteProfiles dnaJ domain profile. 68 132 IPR001623 -
Seca10g04503 490 Gene3D DnaJ domain 67 181 IPR036869 -
Seca10g04503 490 MobiDBLite consensus disorder prediction 461 481 - -
Seca10g04503 490 PANTHER BNAC03G44070D PROTEIN 1 431 - -
Seca10g04503 490 SMART dnaj_3 67 124 IPR001623 -
Seca10g04503 490 Pfam Domain of unknown function (DUF3444) 210 415 IPR024593 -
Seca10g04503 490 Pfam DnaJ domain 68 129 IPR001623 -
Seca10g04503 490 CDD DnaJ 68 121 IPR001623 -
Seca10g04503 490 PRINTS DnaJ domain signature 70 88 IPR001623 -
Seca10g04503 490 PRINTS DnaJ domain signature 88 103 IPR001623 -
Seca10g04503 490 PRINTS DnaJ domain signature 104 124 IPR001623 -
Seca10g04503 490 SUPERFAMILY Chaperone J-domain 65 133 IPR036869 -
Seca10g04503 490 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04503 Seca-Chr10 102749885 102751357 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04503 4 135 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.294 1.16e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04503 - - gmx:102661977 332.028