Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04469 ATGGCTGCAGTTAATCGACTAGTAATTGATAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGTCACCTCCAGAAATACCGTTTGTATCTTCGAAGGGGTCACAATTTCATAAACTCAGCCGCGCCTCTCGATCAACCCCTCTTCCCCCCTCCGTTCTCCATCAATCTATTCGCCGGCGGCCTCCGTTCTCCACCGATCTGTTCACCAGCAACGGTTGTCTCCTTCGAGCCATTTGGAGAAGGGCAACTGCAAAATTTGAGCAGCAGTAAACCAATGAACTTTCTTCATGGAATCCCTACCAACATGGAGCCAAAGAAGTTTGCCAATTTGCACCAGTCTACTCAATCCCTTGGAAACTTTAATGTGCAATTCAATGCTTCTGCTGCGCAGAGAAGCCCCTTGTTGATGCAGATAGCTCAGTCTCAACCAAGAGGTCAAATGCTAAGTGAAAATAGTGGTTCTCATGTTACTAGCAACATAACTCCTGCCTATAATCCAGTTCCACAAAGGTCTTCCTTGTTGAGTTTTCCCATGAACCAAACCACTGAAATGCCAGTGAGTAGTTTCCCTCTTAGAAGCACTCCAGGCATATCCAGTATCACTACAAAAGGCATGTTCCATGAGGAAGTAGGAGGATCTTATGAGTGCACTTCTGAAACAGAGTCTATCATTTCACTGCTTGATGGGAAAGTTTTAAAGGTTAAATATGAAAATTTGGTGCTGGCAAATCCCGATATTCTTGATGGAGTGGATGATCTCATGCAACTTAGTTATTTAAATGAACCATTTCCTCATCAATTTTGTTTATCGTTATTTAATGGTTGTGTCTGTGAGTATATCATACTTTACTGGGGAAGGGCCACAGGGATGTATATCTCTGCAGATTTCCTCATCAATTTTGTTTATCGTTATTTAATGGTTGTGTCTAGGCATGAACTTGTTTTTGTCATGGAGAAGAATAGTGCAGGCCAAGTGTCAGGCGATGAAGATGTTGCAAAAGGGTCAGGGAAGATACCACCACATATCTGTGATGCTATTGTGAGAGAACTGTTGAGTAGTGTCGAGATCATATCGGGGTCTATACTGAATGTCACTTCTAGGGTGAGTGATCTTGAGAAAAGAATTGTTAGCTTGTCCTCCAAGGTGAAATATCTTGAGTCACAAATTGCTTTAGTCAGAGACACCAACGTGAAGGGAAATAAAACAATAGTGAGTCCAGCTGAAGGGCTACATGGTTTAGACCGTGATTCTTCGAAGGAACAATTAAATGAAAATGAAGAGGACAATAAATTTTCTGTTGTTGTGTTTGAGGAAGAGGATAGCTTTGAAAGAGCTTTGCTATATACCCCTAAGCAACACGGTCCGCCTACATCTGCATCATCATCGAAGGCGTCACCTCCAAAGTTTAAGCACTTTGCCAAAACTGAGTATGACTCATACTATAGCTCTAGCGGGGAGAACATGCTATATGTTTTGGCTAGTAATCTCCGAGGAGGATTGACAACATAG 1545 0.4214 MAAVNRLVIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRGHNFINSAAPLDQPLFPPPFSINLFAGGLRSPPICSPATVVSFEPFGEGQLQNLSSSKPMNFLHGIPTNMEPKKFANLHQSTQSLGNFNVQFNASAAQRSPLLMQIAQSQPRGQMLSENSGSHVTSNITPAYNPVPQRSSLLSFPMNQTTEMPVSSFPLRSTPGISSITTKGMFHEEVGGSYECTSETESIISLLDGKVLKVKYENLVLANPDILDGVDDLMQLSYLNEPFPHQFCLSLFNGCVCEYIILYWGRATGMYISADFLINFVYRYLMVVSRHELVFVMEKNSAGQVSGDEDVAKGSGKIPPHICDAIVRELLSSVEIISGSILNVTSRVSDLEKRIVSLSSKVKYLESQIALVRDTNVKGNKTIVSPAEGLHGLDRDSSKEQLNENEEDNKFSVVVFEEEDSFERALLYTPKQHGPPTSASSSKASPPKFKHFAKTEYDSYYSSSGENMLYVLASNLRGGLTT. 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04469 514 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 230 IPR044841 GO:0003700|GO:0006355
Seca10g04469 514 MobiDBLite consensus disorder prediction 419 438 - -
Seca10g04469 514 MobiDBLite consensus disorder prediction 461 480 - -
Seca10g04469 514 FunFam Two-component response regulator 1 45 - -
Seca10g04469 514 Gene3D - 1 44 - -
Seca10g04469 514 MobiDBLite consensus disorder prediction 424 438 - -
Seca10g04469 514 Coils Coil 380 400 - -
Seca10g04469 514 NCBIfam myb-like DNA-binding domain, SHAQKYF class 2 40 IPR006447 GO:0003677
Seca10g04469 514 SUPERFAMILY Homeodomain-like 2 44 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04469 Seca-Chr10 101620390 101630191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04469 1 225 Response Regulator Gene Family AT3G16857 34.333 6.13e-25 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca10g04469 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04469 - K14491 gmx:100809583 251.906