Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04462 CGCCTATGTTCTTCGTCTACCGCACACTATGCCAGATTGGGGTTTTTACCACGCTTGCGAGCTTGCTGTGTCGAGCCGCTTCTCCTACGAGTTTGTTGCGCCGCCTGCTGCAACTGTGTTGTGCCGCCTACTGCAACTGTGCTGCGCCGCCGTCTCCGTTGTTCGAGCTTGTCGTGTTCGTCGCTGGTGCTTGCTGCCTCTGCCGCGTCGCTGTCTCTGGAAGTGGTGTTTGCTCCTCTATCGTGCCCAATCTCCGGGAAAGCGCAAAAATTCATTTGGAGTTTGAGTGATGTAGCCACATTTGGAGTTGGTACCCTTCAGGTTCTGCTGAAAGAAAACTTGGTTCACAAGATAGGGAGGGAAGAAAGGGGTCATGGCAGCAGCCGCTTGACTACGATGGCGTCTGGCCGCGATGATGCGTTGGGAGGCCGCCGTGACGGCAAAGCTGCACAAGGAGAGGATGGCGGTCGTTGGCCGCGACTGAAACGACGCGCACGGAGCGTGATGGGCCCTGCAGAGGCACGCGGTGGTGGCATGGACAACGGCCATTTTGACGGCGACTTGGAAGTGGTTCAGGGAGTGGTTCTCTCTCTGCCACCGATCCAATCCTTTGTGACTCATAATCACTATGACACCCTTCAGGAACTGGAGGACAGATATGGGGGTTGGCTAATTCCCCAATCACAGGAAGACTTTAGATTTTATGCGGACTTATGTTTTAAAACATTTGGTGAGAGAGTCAAGTACTGGGTCACCTTCAACCAGCTAAATTTATTAGTGCCACATGGTTACCGTTCAGGGTTATATGTAGAATGCCCTATTGGGGCTTTGCACATTGATTTCTTTTGTTTTCTTCTTGACAATGAACTTGATGAAATCTCAAGCCAAGTCAGTGCAGAAATAAATCTCAACAGAAGTGTGAAGGTTAATCTGCTAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAACTACTCAAGAAAATCAAGCAGGAGTCTTTTGTTTTTAGAGAGATTCCAGTAGTGATCATGTCGTCGGAGAATATCTTGACTCGTATTGATAGGTAA 1071 0.4986 RLCSSSTAHYARLGFLPRLRACCVEPLLLRVCCAACCNCVVPPTATVLRRRLRCSSLSCSSLVLAASAASLSLEVVFAPLSCPISGKAQKFIWSLSDVATFGVGTLQVLLKENLVHKIGREERGHGSSRLTTMASGRDDALGGRRDGKAAQGEDGGRWPRLKRRARSVMGPAEARGGGMDNGHFDGDLEVVQGVVLSLPPIQSFVTHNHYDTLQELEDRYGGWLIPQSQEDFRFYADLCFKTFGERVKYWVTFNQLNLLVPHGYRSGLYVECPIGALHIDFFCFLLDNELDEISSQVSAEINLNRSVKVNLLMTDYSMPGMTGYELLKKIKQESFVFREIPVVIMSSENILTRIDR. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04462 356 Pfam Response regulator receiver domain 303 349 IPR001789 GO:0000160
Seca10g04462 356 Gene3D - 286 356 - -
Seca10g04462 356 Gene3D Glycosidases 195 277 - -
Seca10g04462 356 SUPERFAMILY (Trans)glycosidases 201 273 IPR017853 -
Seca10g04462 356 MobiDBLite consensus disorder prediction 139 157 - -
Seca10g04462 356 SUPERFAMILY CheY-like 303 349 IPR011006 -
Seca10g04462 356 PANTHER GLYCOSYL HYDROLASE 201 269 IPR001360 GO:0004553|GO:0005975
Seca10g04462 356 Pfam Glycosyl hydrolase family 1 201 269 IPR001360 GO:0004553|GO:0005975
Seca10g04462 356 MobiDBLite consensus disorder prediction 125 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04462 Seca-Chr10 101582569 101587387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04462 307 356 Response Regulator Gene Family AT3G48100 86.000 3.04e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca10g04462 Glyco_hydro_1 9e-16 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04462 K05350 - gmx:100810985 122.094