LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g04444	ATGGCTGTGCCACCATCATTCTCATCTTCCTTCAGTTACGGATTCACCTACGATGTGTTCCTCAGCTTCAGAGGCAAGGATACTCGCCACGGTTTTATTGGCAATCTCTACAAAGCTCTTCTTGACAGGGGAATCCGCACCTTCATTGACGATGAGGACCTTCAGAGAGGGGACGAAATCACACCGTCACTTGTTAGGGCAATTGAAGAGTCCAGGATTGCCATCCCTGTGTTCTCTAACAACTATGCTGCTTCTTCATTTTGCTTAGATGAACTTGCCAAGATATTTGAGTGCTTCAAGAGGAAGGGTCGGTTGGTTTTGCCGGTGTTTTATGATGTAAATCCTTCTCATGTGCGACATCAGACTGGGAGTTATGGAGAATCACTGGCTAAACATGAAGAGAGGTTCAGAAATGTCAAGGAAAATTTCAAGGATAACATGGAGAGGTTTAAAAAATGGAAGATGGCTCTTAAGGAAGCAGCTGAATTGTCCGTTAAAGAGGTCTCCAACAAGATCAACCGTGTTCCTTTGCATGTTGTGGATTGTCCTGTTGGACTGGAGCGTCGCGTGTTAGCAGTAAAGTCGCTTCTGGATGTTGGATCTGATGATGGAGTCCACTTGGTAGGGATCTATGGAATTGGCGGAATGGGTAAAACGACACTTGCTCGAGCAATTTATAATTTGATTGCTGACCTATTTGAAGGTTTGTGTTTTCTTGATGACGTGAGAGAACAGTCAATTAAACATGGATTAGTACATCTCCAAGAGATGCTTCTTTCTGAAATAGTTGGAGAGAAGGATATTAAGATAGGAAGTGTCTATAAAGGGATTTCAATAATAAAGCATAGGCTCCACCGAAAGAAGATTCTTTTAATTCTTGATGATGTTGACAAACTTGAACAGTTGCGGGCAATCGTTGGAGGGACTAACTGGTTTGGTTCTGGTAGCAGAATCATCATAACAACTCGAGACAAACATTTACTAGCAAGTCATGGGGTTGAGAGAAAATATGAGGTGGAGGAATTTAATGAAGAAGAAGCACTTGAATTGCTGAGTTGGAATGCTTTTAGAAAGGACAAATTTGATCCAAGATACAAGGACATTGTAAACCAAGTAGTAGCTTATGCTTCTGGCCTTCCGTTGGCTTTAGAAGTAGTAGGTTCGCTCTTGTTTGGGAAGAATATAAAAGAATGGGAATCTGCATTAGATCAATATAAAAAAATTCCTAATAAAAAGATCCAAGATATACTTAAGGTAACCTTTAATGCTTTAGAGGAAGATCATCAGAAAGTTTTTCTTGACATTGTTTGTTGCTTGAAAGGATATGAATTGGAAGAGGTTGAAGATATACTTTGCGCTCATTATGGTGTCTCCATGAAATATGGTATTGGAGTGTTGGTTGATAAATGTCTCCTAAAGATTAGGAATGGTTGTGTGACATTTCATGAATTGATAGAGGTCATGGGTAAAGAAATTGATCGTCAAGAATCGCCAGAAGAGCTTGGGAAGCATAGAAGGTTATGGTTCCATAAAGATATACTTCAAGTTTTAGCACAAAATATGGGGACTAGTGAGATTGAAATCATACATCTGGATTTCCCTTTATTTGAAGAAGATGAAGAAGCATTAGTAGAATGGGATGGAGAGGCCTTCAAGATGATGAAAAATCTCAGAACACTTATTATTAGAAATTGTCATTTTTCCAGAGGTCCCAAATATCTTCCAAATAGTTTAAGAGTATTAGAGTGGTGGCCATATCCTTTAAAGGATTTACCATATGATTTTCATCCAAACAAACTTACCATATGCAAGTTACCCAAAAGTTGCTTTACGTCGCTTGAGTTAGCAAGCTTATTGAAGGCAAGTATTCCTGATGTATCTGGTCTCCCAAATTTAGAAAAAATGTCATTTGAATGTTGTGAAAATTTAGTTACAATTCATGATTCGGTTGGGTTCTTGGATAAACTTAAAATCTTGAGTGCATTTGGTTGCACCAAGCTAAGGAGTTTTCCACCCATTAAGTTGTTCTCTCTTGAAGAACTCAAGCTTTCATCTTGCACAAGTCTGGAGAGTTTTCCAGAAATATTAGGAAAGATGGAAAATATGAAACGGCTTGAATTGAAGCACACTCCAATAATAGAATTGCCATTTTCTTTTGGAAATCTTACTCGGCTTCGAGATTTAGCACTGCTTGACTGTGAAAATATTCAATTGCCAAGTAGTATTGTCATGTTGCCAGAACTAGCTGAGATTTTTGCTATGGAATGCAAAGGATGGCTATTACCAAAACAGGACAAGGGTGAAGAAAAAGTGAGCTCAATGTCTTCAAATGTAAAATGTCTTTGTCTCTCAGGCTGCAATCTGTCAGATGAATATTTTCCCATAATTTTCGCATGGTTTCCTAACATGAAAGAGTTAGAGCTATCAGGCAATAATTTCACATTTCTTCCTGAATGCATCAAAGAATGTCACTCTTTAACATTGCTTAATTTGGATAATTGTGAGCGTCTTCTAGAAATTAGAGGGATTCCGCCAAATTTGGAATATTTCTCTGCAGGAAATTGCAAATCCTTGACTTTTTGGTGTACAAGCATGTTACTGAATCAGGGACTGCATGAGGCTGCAAACACCATGTTTTGTTTGCCAGGAGTAAGGATTCCAGAGTGGTTCAATCACCACGGCACAGGACCTTCAATTTCTTTCTGGTTTCGTAAGCAGTTTCCAGCTATAGTGCTCTGTTTTGTTGTTGGACCGATGGGTAAGGACACTATTTTGTTTAGACCCATCTTGACCGTCAATGGCAATGCAATGAAGATAGAGTTATTAACTGAAAAAAGGGCTTGTTTTGACTTCCCAGCATTAACTGATCATATACTTATCATTGGTACAAGATACATGAAGTTTGAAGATAATCAGGATAGAGTATTTTCAGAAAATGAATGGAATAATGTGGTGGTCTCTATTGGTATTGATTTTGAACCTATCCCAAAGGAAATAGTTGTCAAAGGAACTGGACTCCATGTAATCAACCAAAAAAGTAACATGGACGATATCCGATTCACTGATCCTTATAACCAATCATTTCTGAAAGAAAAGCATAGATTGGTGGACATTGGAGATTCTCATAGACAATTTATGCAGTGGCAAACAAATTTGGTTTCATTGGAACCGCATGTGGGACTGGACAGAGAGTCACTTCCATTGCTTCCGTCTTCAGCATTCAACAATAATGTGAATTGGCATTCGAATTCAACACAGATGAGTAGCACAACCAGTGTCCAAGGCCATGAAATTGCATCGCAAAAGAGAAAAATAAGTGAATTAAGGTTGGACATGGGAGTTTTACAATTTGTGCAGCAGCGTAAAAGATTGGCTTCGCTGGGTTTATTGCAACAACATGGCAGGGCTTCATTGGGTTTGTTGGATCGGCGGGGCAAAGAGCGGCTTTCATTGCTTCCATCTCCAGCATTCAACGATAATGTAAATTGGCATTCAAATTCAACATGGATAAGTAGCACCACCAATGTCCAACGCCATGGAGTTGTGCCACAAAAGAGAAAAGCTGGTGAATTATGGCTGGACATGGGGGTTTTACAATTTGTGCAGCAGCAGAAAAGATTGGCTTCATTGGGTTTATTGCAACGACAGGACAGGGCTTTATCAGGTTTTTTGCAACAGCAAGGCAAAAGGCAGCTTTCATTGCTTCCACCTCCAGCATTGGTGTTATTGAATGATAATGTGAATTGGGATTCAAATTTGATGGTATCATCGCATATGAGTAGCACCACTAGTGTGCGACTGCGAGGTTTGCAAGAGCAACAACATTTACCTTCCACTTCCACCATCAAACATAATTTTGAAGGCTGTGAAAGTGTAAATGAAGCCAAAGGAAAAGAAATGGTTGAATGCAACAACAATGATGGAGAGGACAATGACAGGAGCCTAGTTCTGGAGCAGCTATCTGTGACAAAGGTTAGAGGGTATTATTGA	3990	0.393	MAVPPSFSSSFSYGFTYDVFLSFRGKDTRHGFIGNLYKALLDRGIRTFIDDEDLQRGDEITPSLVRAIEESRIAIPVFSNNYAASSFCLDELAKIFECFKRKGRLVLPVFYDVNPSHVRHQTGSYGESLAKHEERFRNVKENFKDNMERFKKWKMALKEAAELSVKEVSNKINRVPLHVVDCPVGLERRVLAVKSLLDVGSDDGVHLVGIYGIGGMGKTTLARAIYNLIADLFEGLCFLDDVREQSIKHGLVHLQEMLLSEIVGEKDIKIGSVYKGISIIKHRLHRKKILLILDDVDKLEQLRAIVGGTNWFGSGSRIIITTRDKHLLASHGVERKYEVEEFNEEEALELLSWNAFRKDKFDPRYKDIVNQVVAYASGLPLALEVVGSLLFGKNIKEWESALDQYKKIPNKKIQDILKVTFNALEEDHQKVFLDIVCCLKGYELEEVEDILCAHYGVSMKYGIGVLVDKCLLKIRNGCVTFHELIEVMGKEIDRQESPEELGKHRRLWFHKDILQVLAQNMGTSEIEIIHLDFPLFEEDEEALVEWDGEAFKMMKNLRTLIIRNCHFSRGPKYLPNSLRVLEWWPYPLKDLPYDFHPNKLTICKLPKSCFTSLELASLLKASIPDVSGLPNLEKMSFECCENLVTIHDSVGFLDKLKILSAFGCTKLRSFPPIKLFSLEELKLSSCTSLESFPEILGKMENMKRLELKHTPIIELPFSFGNLTRLRDLALLDCENIQLPSSIVMLPELAEIFAMECKGWLLPKQDKGEEKVSSMSSNVKCLCLSGCNLSDEYFPIIFAWFPNMKELELSGNNFTFLPECIKECHSLTLLNLDNCERLLEIRGIPPNLEYFSAGNCKSLTFWCTSMLLNQGLHEAANTMFCLPGVRIPEWFNHHGTGPSISFWFRKQFPAIVLCFVVGPMGKDTILFRPILTVNGNAMKIELLTEKRACFDFPALTDHILIIGTRYMKFEDNQDRVFSENEWNNVVVSIGIDFEPIPKEIVVKGTGLHVINQKSNMDDIRFTDPYNQSFLKEKHRLVDIGDSHRQFMQWQTNLVSLEPHVGLDRESLPLLPSSAFNNNVNWHSNSTQMSSTTSVQGHEIASQKRKISELRLDMGVLQFVQQRKRLASLGLLQQHGRASLGLLDRRGKERLSLLPSPAFNDNVNWHSNSTWISSTTNVQRHGVVPQKRKAGELWLDMGVLQFVQQQKRLASLGLLQRQDRALSGFLQQQGKRQLSLLPPPALVLLNDNVNWDSNLMVSSHMSSTTSVRLRGLQEQQHLPSTSTIKHNFEGCESVNEAKGKEMVECNNNDGEDNDRSLVLEQLSVTKVRGYY.	1330

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g04444	1329	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	170	435	IPR027417	-
	Seca10g04444	1329	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	162	IPR035897	-
	Seca10g04444	1329	Gene3D	-	164	335	IPR027417	-
	Seca10g04444	1329	SMART	AAA_5	204	333	IPR003593	GO:0016887
	Seca10g04444	1329	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	177	-	-
	Seca10g04444	1329	Pfam	TIR domain	17	179	IPR000157	GO:0007165
	Seca10g04444	1329	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	775	IPR044974	GO:0006952
	Seca10g04444	1329	Gene3D	Ribonuclease Inhibitor	531	876	IPR032675	-
	Seca10g04444	1329	ProSiteProfiles	TIR domain profile.	15	172	IPR000157	GO:0007165
	Seca10g04444	1329	Gene3D	-	3	158	IPR035897	-
	Seca10g04444	1329	Pfam	NB-ARC domain	190	411	IPR002182	GO:0043531
	Seca10g04444	1329	SMART	till_3	16	163	IPR000157	GO:0007165
	Seca10g04444	1329	PRINTS	Disease resistance protein signature	673	689	-	-
	Seca10g04444	1329	PRINTS	Disease resistance protein signature	283	297	-	-
	Seca10g04444	1329	PRINTS	Disease resistance protein signature	376	390	-	-
	Seca10g04444	1329	PRINTS	Disease resistance protein signature	207	222	-	-
	Seca10g04444	1329	SUPERFAMILY	L domain-like	543	864	-	-
	Seca10g04444	1329	SUPERFAMILY	"Winged helix" DNA-binding domain	411	517	IPR036390	-
	Seca10g04444	1329	Gene3D	-	342	425	IPR042197	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g04444	Seca-Chr10	101078759	101086625	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g04444	5	756	WRKY Transcription Factor Family	AT4G12020	31.047	3.45e-72	264

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g04444	-		-	gmx:100814962	1727.22