Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04430 ATGGCAGGTTTAGCATCCTCCTTCTCTTCCTTCACCTACGATGTGTTCCTCAGCTTCAGAGGTTCAGATACTCGCCACGGCTTCACTGGTTTTCTCTACAAAGCTCTTCATGACAGCGGCATCCACACCTTCATCGATAACGAGGAGCTTCACGGAGGGGATGAAATAGCACCATCACTTGTGAAGGCAATTAAGGAGTCTAGGATTGCCATCATTGTTCTCTCTAACAACTATGCATCTTCCACATTTTGCTTAGATGAATTGTCCAATATTATTGATTGCATTAAGAGGAAAGGTCGGTTGGTTTTGCCTGTTTTCTATTGTGTGGATCCTTCTGATGTGAGATATCAGAGAGGGACTTATGTGGACAGGGATGGATATGAACATGTGTTTATTGGGAAGATTGTTGAAGAGGTCTCAAGAAAGATTAAGCGTGTTGCTTTACCGGTTGCTGATTGTCCAGTTGGACTGGAGTCCCAAGTGGTAAATGTAATTTTGCTTCTGGATGTTGAGTCCAATGATGAAGTCCACATGGTAGGGATCTATGGAATTGGTGGAATAGGTAAAACAACGCTTGCTTTAGCAGTTTATAATTCAATTGCTGACCATTTTGAAGGTTTGTGTTTTCTTGAAAATGTTAGAGAAAATTCAAACAAACATGGATTAGTACATCTCCAGAAGATAATTCTTTCTGAGATAGTTGGGGAGAAGAAAATTAAGTTAGCGAGTGTCAAACAGGGAATTTCAATAATACAACATAGGCTTCGGAAAAAGAAGGTTCTTTTGATTTTGGATGATGTTGACAAGCAGGAGCAGTTACAGGCTATTGTTGGAAGAGCTGACTGGTTTGGTCCTGGTAGTAGAGTCATCATCACGACTCGGGACAGACACTTACTAGCATATCACAATGTTGAAAGAACATATGAGGTGAAAGAGTTGAACAAGAAAGATGCTTTTGAATTGCTTAGATGGAAAGCTTTCAAAGCTCACAAAGTAAGTCCAAGTTATGCTGACATTTTAAATCGAGCAGTAACTTATGCTTGTGGACTTCCATTGGCTTTGGAAGTGATAGGTTCCAACTTATTTGGAAAGAATATAGAAGAATGGGAGTCTGCTTTGAATCGATATGAAAGAATTCCAAATAATAAAATCCTTAAGATACTTAAGGTAAGCTTTGATGCTTTGGAGGAAGACGAGCAATGTGTTTTTCTTGATATTGCTTGTTGCTTCAATAGATATGAATTGACAGAGGTCATAGATATACTTCGTGCTCATTATGGTGAATGCATGAAACATCATATTGCAGTTTTGGTTGAAAAGTCTCTTTTAAAGATTAGTTGGGATAATAAAGTGACACTACATGCTTTGATAGAGAAGATGGGTAAAGAAATTGTCCGGCAAGAATCACCAAAAGAGCCAGGGAAGCGCAGTAGATTATGGTTCCCTAAAGATATAGTTCAAGCATCTTCCTCTTCCTCTTCCTCTTCATTCACTTACGATGTGTTTCTCAGCTTCAGAGGCGAGGACACTCGCTACAATTTTACTGGCAATCTCTATAAAGCTCTTTATGATAGAGGAATCTGCACCTTCATTGATGACGAGGAGCTTCAGAAAGGGGAGGAAATTACACCATCACTTCTCAAGGCCATTGATGAGTCCAAGATTGCCATCATTGTGCTCTCTAAGAATTATGCATCTTCATCATTTTGCTTGGATGAACTTTCCAAGATTCTTGATAGCATTAACGGAAAGGGTCGACTGGTTTTGCCAGTATTTTATGACGTGGACCCTTCTGATATACGAAAGCTGACGGGGACTTATGGAGAAGCAATGGCTAAGCTTGAGGAGCGGAAAGAATATGAACACAAGTTTATTGAGAAGATTGTTGAGAAAGTCTCAAGCGAGATTAAACCCATCACTTTAGCGGTTGATAATTACCTAGTTGGACTGGAGACCAAAAAGCAACATGTAACATCTCTTTTAGATGTTGGGTCTGATGATAAAGTCCACATGGTAGGGGTTCATGGAATTGGTGGAATAGGTAAAACAACCCTTGCTCTAGAAGTTTATAATTTGATTTCCCACCAATTTGAACGTTCATGCTTTCTTGCAAAAGTTAGAGAAAATTCAGAGAAGCATGAATTACTACATCTACAAAAGAAACTTCTTTGTGAATTAGCTAGAGAGGAGAAAATGGAGTTAACATGTGTCATGCAAGGAATTTCAATAATGCAACAAAGATTACAACACAAGAAGATTCTTTTGATTCTAGATGATGTTGACAAGCGGGAGCAATTAGTTGCTCTTGCTGGAAGACAATGCTTTGGTCCTGGCAGTAGAGTTATTATCACCACGCGGGACAAACACTTGCTAACATGTCATGAGGTTGAAAGTACATATGAGGTGAAGGAGCTGAACAAGAAAGATGCTTTTGAATTGCTTAAATGGAATGCTTTTAAAACTGACAAAGTTTGTTCAAGTTATGTGGACATTTTAAACCGTGCAGTAACTTATGCTTCTGGCCTTCCGTTGGCTTTGGAAGTTATAGGTTCTCACTTGTTTAAGAAAAGTTTAGAAGAATGGAAATCTGCATTAGATGGGTATGAAAGAGTTCCAAATAATGATATCCAAAAGATACTTGAAGTGAGCTTTTCTGCTTTGGGAGAAGAAGAGCAGAGTGTTTTTCTCGACATTTCTTGTTGTTTCATAGGATATAAATTGGACGAGGTTGAAGAAATACTTTGTGCTCATCATGATGGTTGCATAAAACATCACATTGGGTTGTTGGTTGAAAAATCACTCATTAAGATTGGTGATCTTGATTATGTCACAATGCATGACTTGATAGAGGATATGGGTAAAGAAATTGTCCGGCAAGAATCACCGAAACACCCTGGGAAACGTAGTAGGCTGTGGTCCAAAAAAGATATAGTTGAAGTTTTAGAAGAAAATACAGGAACTGCTGAAACTGAAATGATATGTTGGAATTCCTGGTCATGGGAAGATCAAGTAGAATGGGATGGAGAGGCTTTCAGACAGATGAAAAGGCTTAAAACACTTATTATTAAAGGTAGTCATTTTTCCAAAGGTCCCAAATATCTTCCTAATAGTTTAAAAGTACTGGAATGGCTGAGCTATCCTTCACATGTTATACCATCTGATTTTCATCCAAAGAAACTTAAAATATGTAAGTTTTCCACTCTTTGTTTTATTTCTTTTCTTTTGCAGAAGTTCGTGAATATTAGAATTTTAAGTTTTGACAGGTTTAAATGTTTAACAACAATACCGGATGTGTCTGGTCTCCTAAATTTGGAAGAATTTTCATTTAGAGGTTGTGAGAATTTAATTACAATTCATAATTCTGTTGGGTTGCTAGATAAACTTAGAGTATTGAATGCTGAAAATTGTAGCAAGCTTAAGAATTTCCCACCTCTCAAGTTGACCTCTCTTGAAAGTCTCCATCTTTCAGGTTGCAAGAGCCTCGTGGGCTTTCCAGAAATATTAATTGAGATGAAAAATATAACAAAGCTTGAATTGAGAGAAGTTAACATAAAAGAATTACCATTTTCATTTTGTAAGCTTAGTCAGCTTCGATCTTTAAGTTTGGTAGGCTTTGGAACTAGTTTTCAATTACCAAGTAGCATTTATATGATGCCAAAGCTTAGTGAGATTGAAATCATCAAGTCACTTGTGGAGGTGTGGCCATTCATAAAAGAGGGTGAAGAAAAAGTGAGCACAATACCAAACTTACAACGTCTTCAACTCCGCTCGATCAACCTATTAGATGAGTTTTTGGCAATAGGTCTCCAGTGTTTTACAAACATAAAAGAATTAGACCTATCATACAGTGATTTCACAATTATTCCTGAATGCATCAAAGAATGTCACTTTTTATGGAATCTTGTCTTGCTTGGTTGCAAACAACTTCAAGAAACTAGAGGGATTCCGCCAACCTTAAAATATTTATCTGCATACGGATGTGAATCCTTGAGTTCCTGGAGTAGAAGCATGTTACTGAATGAGGTTGGGTTTTTGATTGAATGA 4044 0.3769 MAGLASSFSSFTYDVFLSFRGSDTRHGFTGFLYKALHDSGIHTFIDNEELHGGDEIAPSLVKAIKESRIAIIVLSNNYASSTFCLDELSNIIDCIKRKGRLVLPVFYCVDPSDVRYQRGTYVDRDGYEHVFIGKIVEEVSRKIKRVALPVADCPVGLESQVVNVILLLDVESNDEVHMVGIYGIGGIGKTTLALAVYNSIADHFEGLCFLENVRENSNKHGLVHLQKIILSEIVGEKKIKLASVKQGISIIQHRLRKKKVLLILDDVDKQEQLQAIVGRADWFGPGSRVIITTRDRHLLAYHNVERTYEVKELNKKDAFELLRWKAFKAHKVSPSYADILNRAVTYACGLPLALEVIGSNLFGKNIEEWESALNRYERIPNNKILKILKVSFDALEEDEQCVFLDIACCFNRYELTEVIDILRAHYGECMKHHIAVLVEKSLLKISWDNKVTLHALIEKMGKEIVRQESPKEPGKRSRLWFPKDIVQASSSSSSSSFTYDVFLSFRGEDTRYNFTGNLYKALYDRGICTFIDDEELQKGEEITPSLLKAIDESKIAIIVLSKNYASSSFCLDELSKILDSINGKGRLVLPVFYDVDPSDIRKLTGTYGEAMAKLEERKEYEHKFIEKIVEKVSSEIKPITLAVDNYLVGLETKKQHVTSLLDVGSDDKVHMVGVHGIGGIGKTTLALEVYNLISHQFERSCFLAKVRENSEKHELLHLQKKLLCELAREEKMELTCVMQGISIMQQRLQHKKILLILDDVDKREQLVALAGRQCFGPGSRVIITTRDKHLLTCHEVESTYEVKELNKKDAFELLKWNAFKTDKVCSSYVDILNRAVTYASGLPLALEVIGSHLFKKSLEEWKSALDGYERVPNNDIQKILEVSFSALGEEEQSVFLDISCCFIGYKLDEVEEILCAHHDGCIKHHIGLLVEKSLIKIGDLDYVTMHDLIEDMGKEIVRQESPKHPGKRSRLWSKKDIVEVLEENTGTAETEMICWNSWSWEDQVEWDGEAFRQMKRLKTLIIKGSHFSKGPKYLPNSLKVLEWLSYPSHVIPSDFHPKKLKICKFSTLCFISFLLQKFVNIRILSFDRFKCLTTIPDVSGLLNLEEFSFRGCENLITIHNSVGLLDKLRVLNAENCSKLKNFPPLKLTSLESLHLSGCKSLVGFPEILIEMKNITKLELREVNIKELPFSFCKLSQLRSLSLVGFGTSFQLPSSIYMMPKLSEIEIIKSLVEVWPFIKEGEEKVSTIPNLQRLQLRSINLLDEFLAIGLQCFTNIKELDLSYSDFTIIPECIKECHFLWNLVLLGCKQLQETRGIPPTLKYLSAYGCESLSSWSRSMLLNEVGFLIE. 1348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04430 1347 SMART till_3 12 151 IPR000157 GO:0007165
Seca10g04430 1347 SMART till_3 498 635 IPR000157 GO:0007165
Seca10g04430 1347 Gene3D Ribonuclease Inhibitor 999 1164 IPR032675 -
Seca10g04430 1347 SUPERFAMILY "Winged helix" DNA-binding domain 875 982 IPR036390 -
Seca10g04430 1347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 898 IPR027417 -
Seca10g04430 1347 Gene3D - 804 888 IPR042197 -
Seca10g04430 1347 Gene3D - 312 396 IPR042197 -
Seca10g04430 1347 Pfam NB-ARC domain 651 874 IPR002182 GO:0043531
Seca10g04430 1347 Pfam NB-ARC domain 161 380 IPR002182 GO:0043531
Seca10g04430 1347 Gene3D - 491 634 IPR035897 -
Seca10g04430 1347 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 499 1166 IPR044974 GO:0006952
Seca10g04430 1347 SUPERFAMILY Toll/Interleukin receptor TIR domain 489 630 IPR035897 -
Seca10g04430 1347 Gene3D Ribonuclease Inhibitor 1165 1341 IPR032675 -
Seca10g04430 1347 Pfam TIR domain 13 123 IPR000157 GO:0007165
Seca10g04430 1347 Pfam TIR domain 499 620 IPR000157 GO:0007165
Seca10g04430 1347 Gene3D - 10 125 IPR035897 -
Seca10g04430 1347 ProSiteProfiles TIR domain profile. 497 636 IPR000157 GO:0007165
Seca10g04430 1347 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 121 IPR035897 -
Seca10g04430 1347 Gene3D - 635 799 IPR027417 -
Seca10g04430 1347 Gene3D - 136 307 IPR027417 -
Seca10g04430 1347 SUPERFAMILY "Winged helix" DNA-binding domain 382 487 IPR036390 -
Seca10g04430 1347 SUPERFAMILY L domain-like 996 1336 - -
Seca10g04430 1347 SMART AAA_5 668 801 IPR003593 GO:0016887
Seca10g04430 1347 SMART AAA_5 175 317 IPR003593 GO:0016887
Seca10g04430 1347 ProSiteProfiles TIR domain profile. 11 143 IPR000157 GO:0007165
Seca10g04430 1347 PRINTS Disease resistance protein signature 671 686 - -
Seca10g04430 1347 PRINTS Disease resistance protein signature 839 853 - -
Seca10g04430 1347 PRINTS Disease resistance protein signature 1145 1161 - -
Seca10g04430 1347 PRINTS Disease resistance protein signature 747 761 - -
Seca10g04430 1347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 406 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04430 Seca-Chr10 100795684 100806629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04430 9 503 WRKY Transcription Factor Family AT4G12020 29.885 1.92e-45 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04430 - - gmx:100780257 941.414