Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04429 ATGGATCCAAAAGCGTGTGAGAGATCTGCAAAAGATGCTTCAGATTTCAAATGTGGGAAGATTCTCCACGCAGTTGATAAATCAATTGCATGCCCCACTCCAGAGAAGAAGACCGAGCCGTTACACGTCAAGTCCAAAGTGGCAGGAACCCAGCTTCCAGAAAAATACAGGACCATTGCTGATTTGTTTAGTCATATGAGTTGTTCACTTAGATTGCTCCATCTGCGTAAAAAGTCTCCTACTTTTGAAAATATTTGCAGCCAGGTCGAAGTTCTTGCTAAGAGGAAATTCTCCTATGCTCATCTTGCACAGATGAAGTATATACTTTCTGAAGGCATTCATATAGATAAGGTGCTTGTTCATGATAAGAAGAGCTTGTGTATGAAGCCGGATATGAAGATCACCTTGGTATTTGAGGTTGTAGAAGAACACTCCGAGCAATCTGCTGATATGGCTCTTCGGCAATATTTTAGTTCTAGGCTAATTGATTTTAACAATATGCATCCCGAGGCTACTGATATTCCAGAGGCCATACTACCAGAGCCCTTTAGCAGAAGAACTTGTAGCTTGATTTGTGAAGATCTTCCTGTTATTTCTTCAACAGCACTTTCATCAACTTCCAATCAAATTGAACTGTTGCCTGAGAAATTTCATTTGTATCCATTATTTAGTAGACATTTTTCTGTGAAGATTGTTGCTGACCAGACAGAAAAGGCTCAGTGTGTTTCATCCACTAAACCTCATCTGTCACCATATGCGTCTGATTTCCTAGATAACCAAGAAAGTGAAAGCACATGGCAGAAAGGATTGGCACCATTATCTGATCATATGACCAATCTGAATACAGAAAGAGGGCAGCAGAAGGAATCATTTTCAATATGTTATCAACCTAGTGTTATTAATACACCAGTACATGTGATTGGACATTCTGTTAATTGTAGCAGTTCTGAAAGCCCCAATATGAAAATTGTCTCTTCTGCTGATAGTTTAATGACAGAGACACCTGCACAGTCAGCACCTAGGAGATTGTTGCCTGTTTCTGATGTTAAGCTTCAGGATATGACTGCCCAAAAGTCTACATCATGTTTCAAGCCTGCAAAAAGAGTGCTTGACTTTTCACTCATGGAAGGCAATGATGATTTGGACAATAGAATGGACATGTTAGAATATAGCAGAGCTCCACATGAAGTTGATAGCATCCCTGAACCTATCAAAGGATCTTCTGAGGATTGCAATTCTTTTGATTCTGTAACTTCTGTTGCTCTGCCTCAGGAGGTAGAAGAGAACCCTGGTTACTCTTTTGAGAAAACTAACCAAAATCAAGCTGGTTTAGATGCATGGCATAAAAACTTATCGTCATTGGTGGATCTGGTTAACGTGATTGACTCCATATTTCGTTCTGTTAAAAGAACTCCGATCACAAAAGAGGAGCTCCTACAAAAGATAATCCTGAACAGTTTGGACTTTGTTGAGATTGGAGAAGTTGAAGAACGGATTGAGATTCTGGAAAAGTTGGTGCCAGACTGGATTTGCAAGAAGTTGGTTTCTTCAGGAGATATTATGTACTGCGTCAAGAAAGTATCAGATTTGGACTCAGTTCGATCAAGGCTTTCCAGCAATGTGGTTGTAGGAGGTTGA 1638 0.3999 MDPKACERSAKDASDFKCGKILHAVDKSIACPTPEKKTEPLHVKSKVAGTQLPEKYRTIADLFSHMSCSLRLLHLRKKSPTFENICSQVEVLAKRKFSYAHLAQMKYILSEGIHIDKVLVHDKKSLCMKPDMKITLVFEVVEEHSEQSADMALRQYFSSRLIDFNNMHPEATDIPEAILPEPFSRRTCSLICEDLPVISSTALSSTSNQIELLPEKFHLYPLFSRHFSVKIVADQTEKAQCVSSTKPHLSPYASDFLDNQESESTWQKGLAPLSDHMTNLNTERGQQKESFSICYQPSVINTPVHVIGHSVNCSSSESPNMKIVSSADSLMTETPAQSAPRRLLPVSDVKLQDMTAQKSTSCFKPAKRVLDFSLMEGNDDLDNRMDMLEYSRAPHEVDSIPEPIKGSSEDCNSFDSVTSVALPQEVEENPGYSFEKTNQNQAGLDAWHKNLSSLVDLVNVIDSIFRSVKRTPITKEELLQKIILNSLDFVEIGEVEERIEILEKLVPDWICKKLVSSGDIMYCVKKVSDLDSVRSRLSSNVVVGG. 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04429 545 CDD Cdt1_m 34 187 IPR014939 -
Seca10g04429 545 PANTHER DNA REPLICATION FACTOR CDT1 37 538 IPR045173 GO:0003677|GO:0030174|GO:0071163
Seca10g04429 545 Pfam DNA replication factor CDT1 like 52 116 IPR014939 -
Seca10g04429 545 Pfam DNA replication factor Cdt1 C-terminal domain 441 510 IPR032054 -
Seca10g04429 545 SUPERFAMILY "Winged helix" DNA-binding domain 41 183 IPR036390 -
Seca10g04429 545 SMART CDT1_2 52 181 IPR014939 -
Seca10g04429 545 Gene3D - 446 542 IPR038090 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04429 Seca-Chr10 100675551 100680662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04429 397 537 Core DNA Replication Machinery Family AT2G31270 34.028 5.34e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04429 K10727 - gmx:102670055 640.573