Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04425 ATGGATGGAGCTCACTGTCTCAACGACCCTGGGTCTTACAAGTGTTTCTGTCCTCATGGGAACTTTGGAGATGGAACGATCACAGGAGGGTGCCACCCACTTGTTGATGTAAGAACAAAGGTTATCATTGGTACAGGAGTTTTCGCAGGCTTGGGAAGCGTCATTTTACTCCTTGGTCTTTGGTGGTTGCATAAAGTTATAAGGAGAAAAATGGTAAAGAAACGCAAAGAAAAATTCTTCAAACTAAATGGAGGTATGTTGCTAGAACAAAAGTTGTCTTCTAGTGAAGTGAGTCTTGACAAAGCTAAAGTTTTTAGCTTAAAGGACTTAGAGAAGGCAACAGATCACTTTAACATGAACAGAGTACTTGGGAAGGGAAGTCAAGGTACTGTTTACAAAGGCATGCTAACAAATGGACAAATTGTTGCAGTTAAAAAGTTTAAGGTCGAAGGAAATGTTGAAGAATTCATTAGTGAATTTGTCATTCTTTCACAAATTAACCATAGAAATGTGGTTAAATTGTTAGGATGTTGTTTGGAGACAGAAATTCCTTTGCTTGTTTATGAGTTCATTCCAAATGGCAACCTCTATGAACATTTGCATGAACAAAGTGATGACTTACCAATGACATGGGATATGCGTTTGAGAATTGCCACTGAAATTGCAGGAGCTGTATTTTACTTACACTCAGCAGCTTCTATGCCCATTTATCACAGAGACATCAAATCAACAAATATACTATTGGATGGAAAGTATAAGGCAAAAGTAGCAGACTTTGGTGCATCAAGAATGGTCTCCACTGAAGCTACTCACCTCACTACAATGGTTCAAGGTACTTTTGGATACTTGGATCCAGAATATTTCCATACTAGTCAATTCACAGAAAAGAGTGATGTCTTTAGCTTTGGAGTAGTTCTTGCTGAACTTTTAACAGGGCAAAAGGCAATATCCTCCCTAAGACAAGAAGCCAAAAGTTTAGCATCATATTTTAATCTCTCTATGGAGGAAAATCGTCTATTTGATATTATTGATGAAAGAGTCATGAAAGAAGGGGGGAAAGAAAATATCATTGCAGTTGCCAATCTTGCAAGTAGATGTTTAGAATTGAATGGGAAAAAACGGCCAACTATGAAAGAGGTCACATTGGAATTAGAAGGGATCCGAAAATTGGCCGAAAGAAAGTCTAATACTGCACAAGAAAACCATGAAGAACATGAGCTTGCTGAAATTGAAGACTACCAACAATCTTGGGATGTATATTCAATTTCAAATACAGGATTTACTCTGGACAGTGAAACAGCTACCTCAGAAGTCATGCCTATTCTTATCAAATAA 1335 0.3768 MDGAHCLNDPGSYKCFCPHGNFGDGTITGGCHPLVDVRTKVIIGTGVFAGLGSVILLLGLWWLHKVIRRKMVKKRKEKFFKLNGGMLLEQKLSSSEVSLDKAKVFSLKDLEKATDHFNMNRVLGKGSQGTVYKGMLTNGQIVAVKKFKVEGNVEEFISEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLYEHLHEQSDDLPMTWDMRLRIATEIAGAVFYLHSAASMPIYHRDIKSTNILLDGKYKAKVADFGASRMVSTEATHLTTMVQGTFGYLDPEYFHTSQFTEKSDVFSFGVVLAELLTGQKAISSLRQEAKSLASYFNLSMEENRLFDIIDERVMKEGGKENIIAVANLASRCLELNGKKRPTMKEVTLELEGIRKLAERKSNTAQENHEEHELAEIEDYQQSWDVYSISNTGFTLDSETATSEVMPILIK. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04425 444 CDD STKc_IRAK 123 387 - -
Seca10g04425 444 Gene3D Transferase(Phosphotransferase) domain 1 191 422 - -
Seca10g04425 444 FunFam Wall-associated receptor kinase 2 191 407 - -
Seca10g04425 444 ProSiteProfiles Protein kinase domain profile. 117 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04425 444 Pfam Protein kinase domain 118 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04425 444 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 6 397 IPR045274 GO:0007166
Seca10g04425 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Seca10g04425 444 FunFam Wall-associated receptor kinase 2 87 190 - -
Seca10g04425 444 SUPERFAMILY Protein kinase-like (PK-like) 94 384 IPR011009 -
Seca10g04425 444 Gene3D Phosphorylase Kinase; domain 1 88 190 - -
Seca10g04425 444 CDD EGF_CA 3 20 - -
Seca10g04425 444 SMART serkin_6 117 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04425 444 Coils Coil 388 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04425 Seca-Chr10 100533962 100536215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04425 6 392 Receptor kinase-like Gene Family AT1G79670 56.923 2.93e-151 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca10g04425 Pkinase 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04425 - - gmx:100801993 585.489