Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04420 ATGGAGAACCAAGACGAAGGCGATGAAGAGCTTGCACCGCCACCAATGGGCAAGTTGGGTTCCTACAGTGGTGAGGTGATGTTGGTGATTCCCGGGGAAGAATCAGCTGCAGAAGAGACCATGCTCCTTTGGGGTATTCAGCAACCTACCCTTTCCAAACCCAACGCCTTTGTTTCTCAGTCTTCCTTGCAACTCTGCCTTGACTCTTGCGGCCACTCTCTCTCAATTCTTCAGTCTCCTTCGTCCTTGGGCACGCCTGGAGTAACTGGATCAGTGATGTGGGACAGTGGAGTTGTGTTGGGGAAGTTTCTAGAGCATTCTGTTGACTCAGGAATGCTTGTTCTTCAGGGCAAGAAGACTGTTGAATTGGGATCTGGTTGTGGATTGGTCGGTTGCATTGCAGCTCTTTTGGGCGGTGAAGTCATTCTTACTGATCTGCCTGATAGGCTGAGGTTACTTAGAAAGAACATTGAAACCAACATGAAACATGTTTCTCTACGAGGTTCCATAACAGCAACTGAACTCACATGGGGAGAAGATCCTGACCGAGAACTCATTGACCCCACTCCTGATTTTGTGCTAGGATCTGACGTTGTATACAGTGAGAGGGCTGTTGTGGATCTGCTAGAGACACTTGGGCAGCTCTCAGGGCCTAATACAACAATATTTTTGGCTGGGGAACTTCGAAATGATGCCATTCTTGAGTACTTCTTAGAAGCTGCAATGAATGATTTCACAATTGGCCGTGTGGATCAAACACTGTGGCATCCAGATTATCGCAGCAATCGAGCAACCAGCAACATGTCATCATCACCAACCCCTCAAGTCATAACCTGCAAAGCTGCAGTGGCATGGGGAGCAGGAGAGCCATTGGTAATGGAAGAAGTGGAAGTTAGTCCTCCCCAACCAATGGAGATTAGGATTAAGGTTGTCTGCACCTCTCTCTGTCGCAGCGATCTTGCCGCTTGGGAATCTCACGCCATATTTCCTCGTATATTTGGCCATGAAGCATCAGGGATTGTTGAGAGTGTGGGGCTGGGTGTGACTGAATTCAAAGAGGGGGACCATGTGCTAACAGTATTCATTGGAGAATGCATGGCATGCAGACCGTGCACATCAGGAAAAAGTAACATATGTCAAGTTTTGGGATTGGAAAGAAAAGGTTTAATGCATAGTGATCAGAAGACACGCTTCTCAGTAAAAGGGAAGCCTATTTATCATTATTGTGCTGTTTCAAGTTTCAGTGAATATACAGTAGTCCATTCTGGATGTGCAGTCAAAGTCAGCCCACATGTACCTCTTGAGAAAATATGCCTTCTCAGCTGTGGGGTTGCTGCAGGTCTAGGTGCAGCATGGAATGTTGCTAATGTGTCAGAAGGATCAACAGTGGTGATATTTGGTCTTGGAACTGTTGGCCTTTCTGTTGCACAAGGTGCCAAACTAAGGGGTGCATCTCGAATAATTGGTGTGGACAACAATCCGCAGAAGTGTGAAAAGGCTAAAGCTTTTGGGATTACAGAAGTTGTTGATCCGAATTCCTATAAAGAACCTATTGCTCAAGTTATTAAGCGCATTACTGATGGTGGGGCAGATTTCTCTTTTGAATGTGTAGGTGACACTGATATGATAACCACTGCATTGCAGTCATGCTGTGATGGATGGGGTTTGACTGTAACACTTGGTGTGCCAAAGGTGAAGCCTGAGATGTCAGCTCATTATGCACTATTACTAATGGGAAGAACGTTGAAAGGGTCTCTATTTGGAGGATGGAGACCTAAATCTGATCTTCCTTCATTAGTTGAGAAGTATGTGAACAAGGAAATCCAGATTGATGACTATATAACACACAATTTGCCATTTGATGATATCAACAAAGCTTTCAATCTCATGAGGGAAGGAAAATGTTTACGTTGTGTTATCCACATGTCACGATAA 1935 0.4522 MENQDEGDEELAPPPMGKLGSYSGEVMLVIPGEESAAEETMLLWGIQQPTLSKPNAFVSQSSLQLCLDSCGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHSVDSGMLVLQGKKTVELGSGCGLVGCIAALLGGEVILTDLPDRLRLLRKNIETNMKHVSLRGSITATELTWGEDPDRELIDPTPDFVLGSDVVYSERAVVDLLETLGQLSGPNTTIFLAGELRNDAILEYFLEAAMNDFTIGRVDQTLWHPDYRSNRATSNMSSSPTPQVITCKAAVAWGAGEPLVMEEVEVSPPQPMEIRIKVVCTSLCRSDLAAWESHAIFPRIFGHEASGIVESVGLGVTEFKEGDHVLTVFIGECMACRPCTSGKSNICQVLGLERKGLMHSDQKTRFSVKGKPIYHYCAVSSFSEYTVVHSGCAVKVSPHVPLEKICLLSCGVAAGLGAAWNVANVSEGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPQKCEKAKAFGITEVVDPNSYKEPIAQVIKRITDGGADFSFECVGDTDMITTALQSCCDGWGLTVTLGVPKVKPEMSAHYALLLMGRTLKGSLFGGWRPKSDLPSLVEKYVNKEIQIDDYITHNLPFDDINKAFNLMREGKCLRCVIHMSR. 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04420 644 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 334 348 IPR002328 GO:0008270|GO:0016491
Seca10g04420 644 CDD alcohol_DH_plants 277 641 - -
Seca10g04420 644 Pfam Lysine methyltransferase 89 237 IPR019410 -
Seca10g04420 644 FunFam Alcohol dehydrogenase 6 282 460 - -
Seca10g04420 644 Gene3D - 447 585 - -
Seca10g04420 644 PANTHER ALCOHOL DEHYDROGENASE 275 640 - -
Seca10g04420 644 SUPERFAMILY GroES-like 589 641 IPR011032 -
Seca10g04420 644 FunFam S-(hydroxymethyl)glutathione dehydrogenase 447 585 - -
Seca10g04420 644 Gene3D Vaccinia Virus protein VP39 72 270 IPR029063 -
Seca10g04420 644 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 432 606 IPR036291 -
Seca10g04420 644 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 234 IPR029063 -
Seca10g04420 644 Pfam Zinc-binding dehydrogenase 471 592 IPR013149 -
Seca10g04420 644 SUPERFAMILY GroES-like 274 452 IPR011032 -
Seca10g04420 644 Gene3D - 282 637 - -
Seca10g04420 644 Pfam Alcohol dehydrogenase GroES-like domain 304 427 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04420 Seca-Chr10 100500087 100510578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04420 305 379 Monolignol Biosynthesis Gene Families AT2G21730 39.241 4.85e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04420 K00001 - gmx:100819938 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04420 10 100500087 100510578 Seca10g04420 10 100500087 100510578 ECH