Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04407 ATGAACTTAGTCTTTAACATAAGCTTTTGTTATGTGGTCTTTTTGTTTTTGTCATTGAACATGGTCTTGTGTGTTGAGGTTAAGGATTTCTATCCAGAAGAAAGAGATGCTTTGTTGCTCACAAGGGATTCTTTAAATTCTTCTCTCAATTTGCATGGGAATTGGACAGGACCTCCTTGTATAGACAATCAGAGTAGATGGTTTGGTATAACTTGTTCCAATTGGCATGTTGTTCACATTGTCCTTCATGGAGTTAATCTTAGTGGTTATTTACCTCCTACATCCTTTCAAAATATAACTTTCTTGAGGCTACTTGACTTTAGAAACAATGCAGTTTTTGGGCCACTACCAAACCTCACTAGTTTGGTGTTTTTGGAACAAGTCCTATTCTCATCTAATTACTTGTCAGGGTCAATTCCTGTGGAGTATGTTGAACTTCCCAGGCTACAAGTTTTGGAGCTGCAAGAAAACTACATAGATAGTCAAATTCCACCCTTTGATCAACCATCATTGACAAGTTTCAATGTGTCATACAATCATCTGGTAGGGCCAATTCCTGAAACTTCTGTGCTTCAAAGGTTCCCAAAGAGTTCTTTTGATAATAATTCAGATCTTTGTGGTAAGCCATTGGATAAGTTATGTCCTGATGAACCTCCTGCCCCATCTCCAGCTCCATTTCCGGTTGTTGTTCCTCCAAGCCCTGCAGTGGAAAAAATTAAGAAGAGACTTCAAATATGGATTATTGCTTTGATTGCTACTTCAGTTGTACTCTTTCTTTTTATGATCATTATTATTGCCTTCTTGTTTTCTAGAAAACAAACAAGTGGAAAAGAAAAAAGAAGAAATGATTCAGCTGGGTATGTTTTTGGAGCATGGGCAAAGAAGATGGTGTCTTATCCAGGGAAGAGTGATGATTCAGAAAGATTAGGCAGATTGGAATTTTCCAACAAGAAATTTCCAGTTTTTGACATGGATGATTTATTAAGGGCATCAGCAGAAGTTCTAGGAAGAGGGAATTTAGGTGTTACATACAAAGCAACACTTGAAACTGGTACTGTTGTTGCAGTGAAGAGACTTAGCTACATGAATGAATTGAGCAGGAAGGAATTTCTCCATCAGATGCAAATGCTAGGTCAGATAAAGCATGAAAATCTAGTAGAAATTGTCTCCTTTTATTATTCAGAAGAGCAAAAGCTGGTCATATATGAACTAGTCCCTGATGGCACTTTGTTTGAGCTCCTACATGGTAGGGCAGAGGAGTTGGAAGAATGCCTCTTGATTGGACCACAAGACTGGCTATTATCAAAGACATAG 1314 0.3798 MNLVFNISFCYVVFLFLSLNMVLCVEVKDFYPEERDALLLTRDSLNSSLNLHGNWTGPPCIDNQSRWFGITCSNWHVVHIVLHGVNLSGYLPPTSFQNITFLRLLDFRNNAVFGPLPNLTSLVFLEQVLFSSNYLSGSIPVEYVELPRLQVLELQENYIDSQIPPFDQPSLTSFNVSYNHLVGPIPETSVLQRFPKSSFDNNSDLCGKPLDKLCPDEPPAPSPAPFPVVVPPSPAVEKIKKRLQIWIIALIATSVVLFLFMIIIIAFLFSRKQTSGKEKRRNDSAGYVFGAWAKKMVSYPGKSDDSERLGRLEFSNKKFPVFDMDDLLRASAEVLGRGNLGVTYKATLETGTVVAVKRLSYMNELSRKEFLHQMQMLGQIKHENLVEIVSFYYSEEQKLVIYELVPDGTLFELLHGRAEELEECLLIGPQDWLLSKT. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04407 437 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 421 IPR046959 -
Seca10g04407 437 SUPERFAMILY Protein kinase-like (PK-like) 332 419 IPR011009 -
Seca10g04407 437 Gene3D Phosphorylase Kinase; domain 1 298 404 - -
Seca10g04407 437 ProSiteProfiles Protein kinase domain profile. 329 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04407 437 Pfam Protein kinase domain 332 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04407 437 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Seca10g04407 437 Gene3D Ribonuclease Inhibitor 31 216 IPR032675 -
Seca10g04407 437 SUPERFAMILY L domain-like 32 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04407 Seca-Chr10 100289329 100291138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04407 59 416 Receptor kinase-like Gene Family AT1G48480 36.765 4.06e-60 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca10g04407 Pkinase 1.7e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04407 - - gmx:100788386 594.349