Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04405 ATGTCAACCCGTAGATATGCTTTTGGAAGGGCTGATGAGGCTACCCACCCAGACTCTATTAGAGCAACCTTAGCTGAATTTGTCTCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCTCTGGCCTTGCTTTGGGTCTGTATATACTCAAAAAAACTCTCTTTGCATGCTTAACTATAGCTGGTGAATTGTTGGCAGTTGCACTTGCACATGCCTTTGCTTTATTTGCTGCTGTATCTGCTAGCATGCATGTATCTGGTGGTCATGTCAACCCGGCTGTGACATTTGGTGCTCTCATAGGTGGAAGGATCTCTGTGGTTCGAGCCATCTATTACTGGATTGCTCAACTTCTAGGTGCTATAGTGGCTGCTCTCTTGCTCAGACTTGTCACTAATAACATGAGACCATCAGGGTTCCATCTGGCAGGGGGTATTGGAGCAGCACATGGCCTTATACTTGAGATTATCATGACATTTGGGCTGATGTACACAGTATATGCTACTGCAATTGATCCCAAAAGGGGCACTGTAGGGGCCATTGCACCCTTGGCAATTGGACTCATAGTTGGGGCAAATGCACTTGTAGGTGGGCCATTTGATGGAGCATGCATGAACCCTGCTCTGGCTTTTGGGCCTTCTTTGGTGGGCTGGAGATGGCACTACCACTGGATCTTCTGGTTGGGCCCATTTATTGGAGCTGCACTGGCAGCACTTGTGTACGAATATGTTGTGATCCCAACAGAGCCCCCTCATGCACACCAACCTTTAGCTCCTGAAGATTACTAG 783 0.4764 MSTRRYAFGRADEATHPDSIRATLAEFVSTFIFVFAGEGSGLALGLYILKKTLFACLTIAGELLAVALAHAFALFAAVSASMHVSGGHVNPAVTFGALIGGRISVVRAIYYWIAQLLGAIVAALLLRLVTNNMRPSGFHLAGGIGAAHGLILEIIMTFGLMYTVYATAIDPKRGTVGAIAPLAIGLIVGANALVGGPFDGACMNPALAFGPSLVGWRWHYHWIFWLGPFIGAALAALVYEYVVIPTEPPHAHQPLAPEDY. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04405 260 ProSitePatterns MIP family signature. 88 96 IPR022357 -
Seca10g04405 260 PRINTS Major intrinsic protein family signature 152 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g04405 260 PRINTS Major intrinsic protein family signature 70 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g04405 260 PRINTS Major intrinsic protein family signature 107 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g04405 260 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g04405 260 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g04405 260 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g04405 260 FunFam Probable aquaporin TIP1-1 4 257 - -
Seca10g04405 260 CDD MIP 21 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g04405 260 PANTHER AQUAPORIN-8 6 247 IPR034294 -
Seca10g04405 260 NCBIfam MIP family channel protein 25 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g04405 260 Pfam Major intrinsic protein 14 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g04405 260 SUPERFAMILY Aquaporin-like 13 250 IPR023271 -
Seca10g04405 260 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04405 Seca-Chr10 100283404 100284797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04405 2 260 Major Intrinsic Protein MIP AT1G73190 73.485 9.01e-127 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04405 K09873 - gmx:100817450 426.787