Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04386 ATGGCAGAACTCGATCTAATCAAGAAAGTAGCCGATAGGTATCTCAAGCGTGAGGTTCTTGGTGAAGGTACCTATGGTGTCGTATACAAAGCCATTGATACCCAGACAGGACAGACAATTACAATTAAGAAGATTCGACTTGGCAAGCAGAAAGAAGGGGTGAATTTTACAGCTCTTAGAGAAATTAAACTTCTTAAAGAGCTCAAAGATCCAAAAATTATTGAGTTGATTGATGCATTCCTACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGTCGTCTTAGAGACTGGAATATTTTCCTTTCACCAGGCGATATAA 339 0.3864 MAELDLIKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTITIKKIRLGKQKEGVNFTALREIKLLKELKDPKIIELIDAFLHKGNLHLVFEFMETDLEVVLETGIFSFHQAI. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04386 112 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Seca10g04386 112 SUPERFAMILY Protein kinase-like (PK-like) 9 106 IPR011009 -
Seca10g04386 112 Pfam Protein kinase domain 16 104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04386 112 SMART serkin_6 14 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04386 112 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Seca10g04386 112 ProSiteProfiles Protein kinase domain profile. 14 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04386 112 FunFam Cyclin-dependent kinase D-1 5 94 - -
Seca10g04386 112 PANTHER CELL DIVISION PROTEIN KINASE 12 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04386 Seca-Chr10 99783587 99783925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04386 8 101 Core Cell Cycle Gene Families AT1G73690 81.915 1.90e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Seca10g04386 Pkinase 1.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04386 K02202 - gmx:100813673 175.637