Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04385 ATGATGCTTAAAGGTCTTGCTTTTTTCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGACCTAGTGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATATTTGGAAGCCCAGACCGCAGGTTTACTCATCAGGTGTTTGCTCGATGGTATAGAGCACCTGAGCTATTATTTGGATCTCTGATGTATTGA 216 0.412 MMLKGLAFFHKKWVLHRDMKPNNLLIGPSGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGSLMY. 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04385 71 Pfam Protein kinase domain 2 68 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04385 71 ProSiteProfiles Protein kinase domain profile. 1 71 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04385 71 Gene3D Transferase(Phosphotransferase) domain 1 2 69 - -
Seca10g04385 71 ProSitePatterns Serine/Threonine protein kinases active-site signature. 14 26 IPR008271 GO:0004672|GO:0006468
Seca10g04385 71 SUPERFAMILY Protein kinase-like (PK-like) 2 71 IPR011009 -
Seca10g04385 71 PANTHER CELL DIVISION PROTEIN KINASE 2 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04385 Seca-Chr10 99783357 99783572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04385 1 71 Core Cell Cycle Gene Families AT1G73690 84.507 2.25e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Seca10g04385 Pkinase 1.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04385 K02202 - dcr:108214692 140.198