Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04335 ATGGCTGCCTTAACCTTTCTTATCCTTACACTTGTCTTTCTTCAAGTTTTCTTCTTAGCTTTTGCAAACGTTAACCTCAGTTCAACACTCTCCACTAATGACAACCATGCATGGCTTTCACCTTCAGGTGAATTTGCTTTTGGATTTCGCCAACTTAGTGGCACAAGCCACTTCACTGTTGCCATCTGGTATGACAAAATACCAGACAAGACCATCGTTTGGAATGCCAAAGCAAATGATAACATTGCAGAAGCACCAACTGGATCACAGATTCACCTCACATCAGAAGGGCTAATACTGACAAGTCCTGAAAAGGTTACTATATGGATGGCACGACCAGGTGGTGTTGTTTCCTTTGGAGCTATGCTTGACACTGGGAACTTTGTTCTTGCAAATAGGGAGTCTACTTTTGTGTGGGAAAGTTTCAAGAATCCCACTGACACATTGCTCCCTAACCAATCTCTAGAGGCAGATGGCAAGCTAACTTCTAGAATCACAGAGACCAATTACACAAGAGGAAGGTTCCAACTTTATTTTCAAGATGGTAGTGTCTTCCTTTTTTCCCTTGGTTGGCCTTCTCAATTTCGTTATGACCCTTATTATGCATTTGATGCCTCTGGCTCTAGTTCAAAATTAGTGTTCAATAATTCAGGGGATATTTACATAGAGAAAACGAATGGTACTAGAGTCCAACCTCAGGATGCAAAATGGGATACTAATGTAACTCTTGATCCTAAGATGTATTACTATAGAGCAACACTTGACTTCCATGGAGTTTTCACACAATATTCTCATCCAAGGGGCTCCACTTCCCAACCAGGTTGGGAAATTGTGAGGTATGTTCCTAATGACATATGTGATGGAAATGTTTTCATAAACAAACCACTTAGTAGTGGTCCTTGTTGGTATAATAGCTACTGCTCCATGAAAAGTGACAGGCCAACATGTGAATGCCCATATGGGTATTCACTAGTAGATCCAAGTAATGAATTTGGTGGGTGCCAACCCAATTTTACCCTTGGTTGTGGAGCTGATATTGAAGGATTGCAAGGAAGGCCAGAAGAACTATATGAATTGCATGAATCAAGTGATAGGGACTTTATTTTTGCAGAATATGAAATAATTCAACCTTGCTCTCAAAGTGAATGTAAACAATCTTGCTTGCAAGATTGCATGTGTGCTGCTGCTTCCTTCTCTAATAATGGTTGTTACAAGAAAAGATTACCCCTTATTAATGGAAAAATAGGTCCACTTACATATTTGATCTTTACCAAAACAAGAGTTCATCCTCTGACTAGTGCAAACAAGGGACTCCCTACTCTTCCTGACTCAAGGAAAGAAGATCAAGCTAAGTCAATTCTTATGGGGACACTTATCGGTTCCCTTGTCGTTAATAGTATACTACTGGTTACTGTTGTTTTGGTGCTTCTCTTGAAGCCAAAAAGGATTGTCCAAGTTGCAAGTCTTTTGGAAACAAAATTGCATTCATTCACTTATGAAGTACTGAAAAATGCCACACAAGATTTTAGTGAAGAACTAGGGAGGGGTTCCTTTGGCATTGTTTACAAAGGTACTCTAGACTCAGTTTTGTCTCATAATGTGGTTGCTGTCAAGAGATTGGACAGGTTAGGACCAGAAGGAGAGAAGGAATTTAAGACTGAGTTGACTGCTATTGGCAAAACCTATCACAAAAATCTGGTACAGTTGATTGGATTTTGTGATGAGGGAATTCACAGACTATTAGTCTATGAGTTCATGAACAATGGTACTCTAGCAGACATCTTATTTGGACAACCCAAACCCATTTGGAATCTAAGGGTTGGATTTGCTTTGGGGATTGCAAAAGGGTTGGTGTACTTACATGAAGAGTGTGACACTCCCATCATTCATTGTGATATAAAACCTCAAAATATACTCATAGATGACCACTTCACTGCAAAGATCTCTGACTTTGGGTTGGCCAAGCTGTTGTTGTCTCACCAAAGTAGAACCAACACCATGATACGAGGAACTAAAGGGTATGTGGCTCCTGAATGGTTCAAGAATGTTCCTGTCACAGTTAAAGTGGATGTTTATAGCTTTGGTGTCATGTTGCTGGAAATCATTTGCTGCAGAAGAAATGTGTTGCTGAAGGAGTCTGGGGAGGAAGAGAAGGCAATATTGACAGATTGGGCTTATGATTGCTATATGGAAGGGAGAATAGATGCTCTTCTGGATGATGATGACAAGGGGGCTATGGATGACTATGACAAGTTACAAAGGTGGATAAGGATAGCAATTTGGTGCATCCAAGAGCATCATGAGATAAGGCCAACAATGGGGATGGTCATGCAAATGCTAGAAGGCTCTGTTGAGGTCCCTAATCCACCACCTCCTTATTCCTTCAGTTAG 2391 0.4053 MAALTFLILTLVFLQVFFLAFANVNLSSTLSTNDNHAWLSPSGEFAFGFRQLSGTSHFTVAIWYDKIPDKTIVWNAKANDNIAEAPTGSQIHLTSEGLILTSPEKVTIWMARPGGVVSFGAMLDTGNFVLANRESTFVWESFKNPTDTLLPNQSLEADGKLTSRITETNYTRGRFQLYFQDGSVFLFSLGWPSQFRYDPYYAFDASGSSSKLVFNNSGDIYIEKTNGTRVQPQDAKWDTNVTLDPKMYYYRATLDFHGVFTQYSHPRGSTSQPGWEIVRYVPNDICDGNVFINKPLSSGPCWYNSYCSMKSDRPTCECPYGYSLVDPSNEFGGCQPNFTLGCGADIEGLQGRPEELYELHESSDRDFIFAEYEIIQPCSQSECKQSCLQDCMCAAASFSNNGCYKKRLPLINGKIGPLTYLIFTKTRVHPLTSANKGLPTLPDSRKEDQAKSILMGTLIGSLVVNSILLVTVVLVLLLKPKRIVQVASLLETKLHSFTYEVLKNATQDFSEELGRGSFGIVYKGTLDSVLSHNVVAVKRLDRLGPEGEKEFKTELTAIGKTYHKNLVQLIGFCDEGIHRLLVYEFMNNGTLADILFGQPKPIWNLRVGFALGIAKGLVYLHEECDTPIIHCDIKPQNILIDDHFTAKISDFGLAKLLLSHQSRTNTMIRGTKGYVAPEWFKNVPVTVKVDVYSFGVMLLEIICCRRNVLLKESGEEEKAILTDWAYDCYMEGRIDALLDDDDKGAMDDYDKLQRWIRIAIWCIQEHHEIRPTMGMVMQMLEGSVEVPNPPPPYSFS. 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04335 796 Gene3D - 144 272 IPR036426 -
Seca10g04335 796 PIRSF SRK 1 796 IPR024171 GO:0004674
Seca10g04335 796 FunFam S-receptor-like serine/threonine-protein kinase 479 585 - -
Seca10g04335 796 Gene3D Transferase(Phosphotransferase) domain 1 586 786 - -
Seca10g04335 796 ProSiteProfiles Bulb-type lectin domain profile. 23 143 IPR001480 -
Seca10g04335 796 Pfam Protein kinase domain 510 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04335 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Seca10g04335 796 ProSiteProfiles Protein kinase domain profile. 507 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04335 796 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 788 - -
Seca10g04335 796 Gene3D Phosphorylase Kinase; domain 1 474 585 - -
Seca10g04335 796 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 20 143 - -
Seca10g04335 796 Pfam D-mannose binding lectin 71 159 IPR001480 -
Seca10g04335 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 188 IPR036426 -
Seca10g04335 796 ProSitePatterns Protein kinases ATP-binding region signature. 513 538 IPR017441 GO:0005524
Seca10g04335 796 SUPERFAMILY Protein kinase-like (PK-like) 490 781 IPR011009 -
Seca10g04335 796 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 29 792 - -
Seca10g04335 796 Gene3D - 18 143 IPR036426 -
Seca10g04335 796 SMART serkin_6 507 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04335 796 SMART blect_4 29 145 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04335 Seca-Chr10 98323385 98325775 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04335 411 786 Receptor kinase-like Gene Family AT1G56120 40.104 4.00e-70 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca10g04335 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04335 - - gmx:100775269 1040.41